FluspectB.h

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#ifndef HELIOS_FLUSPECT_B_H
#define HELIOS_FLUSPECT_B_H
 
#include <cstddef>
#include <string>
#include <vector>
 
namespace helios {
 
    struct FluspectBiochemistry {
        float Cab = 40.f;    
        float Cca = 10.f;    
        float Cw = 0.009f;   
        float Cdm = 0.012f;  
        float Cs = 0.f;      
        float Cant = 1.f;    
        float Cp = 0.f;      
        float Cbc = 0.f;     
        float N = 1.5f;      
        float V2Z = 0.f;     
        float fqe = 0.01f;   
    };
 
    struct FluspectOptipar {
        std::vector<float> wavelengths_nm;
        std::vector<float> nr;     
        std::vector<float> Kab;    
        std::vector<float> Kca;    
        std::vector<float> KcaV;   
        std::vector<float> KcaZ;   
        std::vector<float> Kdm;    
        std::vector<float> Kw;     
        std::vector<float> Ks;     
        std::vector<float> Kant;   
        std::vector<float> Kp;     
        std::vector<float> Kcbc;   
        std::vector<float> phi;    
    };
 
    struct FluspectKernel {
        std::vector<float> wavelengths_nm;
 
        std::vector<float> refl;
        std::vector<float> tran;
 
        std::vector<float> wle;
        std::vector<float> wlf;
 
        std::vector<std::vector<float>> Mf;
        std::vector<std::vector<float>> Mb;
    };
 
 
    void loadFluspectOptipar(const std::string &xml_path, FluspectOptipar &optipar);
 
 
    FluspectKernel computeFluspectKernel(const FluspectBiochemistry &biochem,
                                         const FluspectOptipar &optipar,
                                         float excitation_step_nm = 5.f);
 
} // namespace helios
 
#endif // HELIOS_FLUSPECT_B_H