global.cpp

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#include "global.h"
 
// EXR Libraries (reading and writing OpenEXR images)
// NOTE: tinyexr must be included before jpeglib because on Windows, tinyexr
// includes <windows.h> which defines INT32 as int, and libjpeg's jmorecfg.h
// has guards (#ifndef _BASETSD_H_) to skip its own conflicting typedef.
#define TINYEXR_USE_MINIZ 0
#include "zlib.h"
#define TINYEXR_IMPLEMENTATION
#include "tinyexr.h"
 
// PNG Libraries (reading and writing PNG images)
#define PNG_DEBUG 3
#define PNG_SKIP_SETJMP_CHECK 1
#include "png.h"
 
// JPEG Libraries (reading and writing JPEG images)
extern "C" {
#include "jpeglib.h"
}
 
using namespace helios;
 
void helios::helios_runtime_error(const std::string &error_message) {
#ifdef HELIOS_DEBUG
    std::cerr << error_message << std::endl;
#endif
    throw(std::runtime_error(error_message));
}
 
RGBcolor RGB::red = make_RGBcolor(1.f, 0.f, 0.f);
RGBcolor RGB::blue = make_RGBcolor(0.f, 0.f, 1.f);
RGBcolor RGB::green = make_RGBcolor(0.f, 0.6f, 0.f);
RGBcolor RGB::cyan = make_RGBcolor(0.f, 1.f, 1.f);
RGBcolor RGB::magenta = make_RGBcolor(1.f, 0.f, 1.f);
RGBcolor RGB::yellow = make_RGBcolor(1.f, 1.f, 0.f);
RGBcolor RGB::orange = make_RGBcolor(1.f, 0.5f, 0.f);
RGBcolor RGB::violet = make_RGBcolor(0.5f, 0.f, 0.5f);
RGBcolor RGB::black = make_RGBcolor(0.f, 0.f, 0.f);
RGBcolor RGB::white = make_RGBcolor(1.f, 1.f, 1.f);
RGBcolor RGB::lime = make_RGBcolor(0.f, 1.f, 0.f);
RGBcolor RGB::silver = make_RGBcolor(0.75f, 0.75f, 0.75f);
RGBcolor RGB::gray = make_RGBcolor(0.5f, 0.5f, 0.5f);
RGBcolor RGB::navy = make_RGBcolor(0.f, 0.f, 0.5f);
RGBcolor RGB::brown = make_RGBcolor(0.55f, 0.27f, 0.075);
RGBcolor RGB::khaki = make_RGBcolor(0.94f, 0.92f, 0.55f);
RGBcolor RGB::greenyellow = make_RGBcolor(0.678f, 1.f, 0.184f);
RGBcolor RGB::forestgreen = make_RGBcolor(0.133f, 0.545f, 0.133f);
RGBcolor RGB::yellowgreen = make_RGBcolor(0.6, 0.8, 0.2);
RGBcolor RGB::goldenrod = make_RGBcolor(0.855, 0.647, 0.126);
 
RGBAcolor RGBA::red = make_RGBAcolor(RGB::red, 1.f);
RGBAcolor RGBA::blue = make_RGBAcolor(RGB::blue, 1.f);
RGBAcolor RGBA::green = make_RGBAcolor(RGB::green, 1.f);
RGBAcolor RGBA::cyan = make_RGBAcolor(RGB::cyan, 1.f);
RGBAcolor RGBA::magenta = make_RGBAcolor(RGB::magenta, 1.f);
RGBAcolor RGBA::yellow = make_RGBAcolor(RGB::yellow, 1.f);
RGBAcolor RGBA::orange = make_RGBAcolor(RGB::orange, 1.f);
RGBAcolor RGBA::violet = make_RGBAcolor(RGB::violet, 1.f);
RGBAcolor RGBA::black = make_RGBAcolor(RGB::black, 1.f);
RGBAcolor RGBA::white = make_RGBAcolor(RGB::white, 1.f);
RGBAcolor RGBA::lime = make_RGBAcolor(RGB::lime, 1.f);
RGBAcolor RGBA::silver = make_RGBAcolor(RGB::silver, 1.f);
RGBAcolor RGBA::gray = make_RGBAcolor(RGB::gray, 1.f);
RGBAcolor RGBA::navy = make_RGBAcolor(RGB::navy, 1.f);
RGBAcolor RGBA::brown = make_RGBAcolor(RGB::brown, 1.f);
RGBAcolor RGBA::khaki = make_RGBAcolor(RGB::khaki, 1.f);
RGBAcolor RGBA::greenyellow = make_RGBAcolor(RGB::greenyellow, 1.f);
RGBAcolor RGBA::forestgreen = make_RGBAcolor(RGB::forestgreen, 1.f);
RGBAcolor RGBA::yellowgreen = make_RGBAcolor(RGB::yellowgreen, 1.f);
RGBAcolor RGBA::goldenrod = make_RGBAcolor(RGB::goldenrod, 1.f);
 
SphericalCoord helios::nullrotation = make_SphericalCoord(0, 0);
vec3 helios::nullorigin = make_vec3(0, 0, 0);
 
RGBcolor helios::blend(const RGBcolor &color0, const RGBcolor &color1, float weight) {
    RGBcolor color_out;
    weight = clamp(weight, 0.f, 1.f);
    color_out.r = weight * color1.r + (1.f - weight) * color0.r;
    color_out.g = weight * color1.g + (1.f - weight) * color0.g;
    color_out.b = weight * color1.b + (1.f - weight) * color0.b;
    return color_out;
}
 
RGBAcolor helios::blend(const RGBAcolor &color0, const RGBAcolor &color1, float weight) {
    RGBAcolor color_out;
    weight = clamp(weight, 0.f, 1.f);
    color_out.r = weight * color1.r + (1.f - weight) * color0.r;
    color_out.g = weight * color1.g + (1.f - weight) * color0.g;
    color_out.b = weight * color1.b + (1.f - weight) * color0.b;
    color_out.a = weight * color1.a + (1.f - weight) * color0.a;
    return color_out;
}
 
vec3 helios::rotatePoint(const vec3 &position, const SphericalCoord &rotation) {
    return rotatePoint(position, rotation.elevation, rotation.azimuth);
}
 
vec3 helios::rotatePoint(const vec3 &position, float theta, float phi) {
    if (theta == 0.f && phi == 0.f) {
        return position;
    }
 
    float Ry[3][3], Rz[3][3];
 
    const float st = sin(theta);
    const float ct = cos(theta);
 
    const float sp = sin(phi);
    const float cp = cos(phi);
 
    // Setup the rotation matrix, this matrix is based off of the rotation matrix used in glRotatef.
    Ry[0][0] = ct;
    Ry[0][1] = 0.f;
    Ry[0][2] = st;
    Ry[1][0] = 0.f;
    Ry[1][1] = 1.f;
    Ry[1][2] = 0.f;
    Ry[2][0] = -st;
    Ry[2][1] = 0.f;
    Ry[2][2] = ct;
 
    Rz[0][0] = cp;
    Rz[0][1] = -sp;
    Rz[0][2] = 0.f;
    Rz[1][0] = sp;
    Rz[1][1] = cp;
    Rz[1][2] = 0.f;
    Rz[2][0] = 0.f;
    Rz[2][1] = 0.f;
    Rz[2][2] = 1.f;
 
    // Multiply Ry*Rz
 
    float rotMat[3][3] = {0.f};
 
    for (int i = 0; i < 3; i++) {
        for (int j = 0; j < 3; j++) {
            for (int k = 0; k < 3; k++) {
                rotMat[i][j] = rotMat[i][j] + Rz[i][k] * Ry[k][j];
            }
        }
    }
 
    // Multiply the rotation matrix with the position vector.
    vec3 tmp;
    tmp.x = rotMat[0][0] * position.x + rotMat[0][1] * position.y + rotMat[0][2] * position.z;
    tmp.y = rotMat[1][0] * position.x + rotMat[1][1] * position.y + rotMat[1][2] * position.z;
    tmp.z = rotMat[2][0] * position.x + rotMat[2][1] * position.y + rotMat[2][2] * position.z;
 
    return tmp;
}
 
vec3 helios::rotatePointAboutLine(const vec3 &point, const vec3 &line_base, const vec3 &line_direction, float theta) {
    if (theta == 0.f) {
        return point;
    }
 
    // for reference this was taken from http://inside.mines.edu/fs_home/gmurray/ArbitraryAxisRotation/
 
    vec3 position;
 
    vec3 tmp = line_direction;
    float mag = tmp.magnitude();
    if (mag < 1e-6f) {
        return point;
    }
    tmp = tmp / mag;
    const float u = tmp.x;
    const float v = tmp.y;
    const float w = tmp.z;
 
    const float a = line_base.x;
    const float b = line_base.y;
    const float c = line_base.z;
 
    const float x = point.x;
    const float y = point.y;
    const float z = point.z;
 
    const float st = sin(theta);
    const float ct = cos(theta);
 
    position.x = (a * (v * v + w * w) - u * (b * v + c * w - u * x - v * y - w * z)) * (1 - ct) + x * ct + (-c * v + b * w - w * y + v * z) * st;
    position.y = (b * (u * u + w * w) - v * (a * u + c * w - u * x - v * y - w * z)) * (1 - ct) + y * ct + (c * u - a * w + w * x - u * z) * st;
    position.z = (c * (u * u + v * v) - w * (a * u + b * v - u * x - v * y - w * z)) * (1 - ct) + z * ct + (-b * u + a * v - v * x + u * y) * st;
 
    return position;
}
 
float helios::calculateTriangleArea(const vec3 &v0, const vec3 &v1, const vec3 &v2) {
    vec3 edge1 = v1 - v0;
    vec3 edge2 = v2 - v0;
    return 0.5f * cross(edge1, edge2).magnitude();
}
 
int helios::Date::JulianDay() const {
    int skips_leap[] = {0, 31, 60, 91, 121, 152, 182, 213, 244, 274, 305, 335};
    int skips_nonleap[] = {0, 31, 59, 90, 120, 151, 181, 212, 243, 273, 304, 334};
    int *skips;
 
    if (isLeapYear()) { // leap year
        skips = skips_leap;
    } else { // non-leap year
        skips = skips_nonleap;
    }
 
    return skips[month - 1] + day;
}
 
void helios::Date::incrementDay() {
    // Compute “Julian day of year” for *this
    const int jd = Calendar2Julian(*this);
 
    // 2) Sanity-check jd
    bool leap = isLeapYear();
    const int maxJD = leap ? 366 : 365;
    if (jd < 1 || jd > maxJD) {
        helios_runtime_error("ERROR (incrementDay): current date out of range (JD=" + std::to_string(jd) + ")");
    }
 
    // Advance
    if (jd < maxJD) {
        // still inside this year
        const Date next = Julian2Calendar(jd + 1, year);
        day = next.day;
        month = next.month;
        // year unchanged
    } else {
        // rollover to Jan 1 of next year
        year += 1;
        month = 1;
        day = 1;
    }
}
 
bool helios::Date::isLeapYear() const {
    if (year % 400 == 0) {
        return true; // Divisible by 400: leap year
    } else if (year % 100 == 0) {
        return false; // Divisible by 100 but not 400: not a leap year
    } else if (year % 4 == 0) {
        return true; // Divisible by 4 but not 100: leap year
    } else {
        return false; // Not divisible by 4: not a leap year
    }
}
 
float helios::randu() {
    return float(rand()) / float(RAND_MAX + 1.);
}
 
int helios::randu(int imin, int imax) {
    float ru = randu();
 
    if (imin == imax || imin > imax) {
        return imin;
    } else {
        return imin + (int) lround(float(imax - imin) * ru);
    }
}
 
float helios::acos_safe(float x) {
    if (x < -1.0)
        x = -1.0;
    else if (x > 1.0)
        x = 1.0;
    return acosf(x);
}
 
float helios::asin_safe(float x) {
    if (x < -1.0)
        x = -1.0;
    else if (x > 1.0)
        x = 1.0;
    return asinf(x);
}
 
bool helios::lineIntersection(const vec2 &p1, const vec2 &q1, const vec2 &p2, const vec2 &q2) {
    constexpr float EPSILON = 1e-9f;
 
    float ax = q1.x - p1.x; // direction of line a
    float ay = q1.y - p1.y;
 
    float bx = p2.x - q2.x; // direction of line b, reversed
    float by = p2.y - q2.y;
 
    float dx = p2.x - p1.x; // right-hand side
    float dy = p2.y - p1.y;
 
    float det = ax * by - ay * bx;
 
    if (std::abs(det) < EPSILON) {
        // Lines are parallel or collinear
        // Check if they are collinear by testing if p2 lies on line through p1 and q1
        float cross = dx * ay - dy * ax;
        if (std::abs(cross) > EPSILON) {
            return false; // Parallel but not collinear
        }
 
        // Lines are collinear - check if segments overlap
        // Project all points onto the dominant axis to avoid division by zero
        float dot_aa = ax * ax + ay * ay;
        if (dot_aa < EPSILON) {
            // First segment is a point
            return pointOnSegment(p1, p2, q2);
        }
 
        // Project onto the line through p1,q1
        float t0 = 0.0f; // p1 projection
        float t1 = 1.0f; // q1 projection
        float t2 = ((p2.x - p1.x) * ax + (p2.y - p1.y) * ay) / dot_aa; // p2 projection
        float t3 = ((q2.x - p1.x) * ax + (q2.y - p1.y) * ay) / dot_aa; // q2 projection
 
        // Ensure t2 <= t3
        if (t2 > t3) {
            std::swap(t2, t3);
        }
 
        // Check if intervals [t0,t1] and [t2,t3] overlap
        return !(t1 < t2 || t3 < t0);
    }
 
    // Lines are not parallel - check if intersection point lies on both segments
    float r = (dx * by - dy * bx) / det;
    float s = (ax * dy - ay * dx) / det;
 
    return (r >= 0 && r <= 1 && s >= 0 && s <= 1);
}
 
bool helios::pointOnSegment(const vec2 &point, const vec2 &seg_start, const vec2 &seg_end) {
    constexpr float EPSILON = 1e-9f;
 
    // Check if point is collinear with segment
    float cross = (point.y - seg_start.y) * (seg_end.x - seg_start.x) - (point.x - seg_start.x) * (seg_end.y - seg_start.y);
    if (std::abs(cross) > EPSILON) {
        return false;
    }
 
    // Check if point is within segment bounds
    float min_x = std::min(seg_start.x, seg_end.x);
    float max_x = std::max(seg_start.x, seg_end.x);
    float min_y = std::min(seg_start.y, seg_end.y);
    float max_y = std::max(seg_start.y, seg_end.y);
 
    return (point.x >= min_x - EPSILON && point.x <= max_x + EPSILON && point.y >= min_y - EPSILON && point.y <= max_y + EPSILON);
}
 
bool helios::pointInPolygon(const vec2 &p, const std::vector<vec2> &poly) {
    constexpr float EPS = 1e-6f;
    const std::size_t n = poly.size();
    if (n < 3) {
        return false;
    }
 
    /* vertex coincidence */
    for (const vec2 &v: poly) {
        if (std::abs(p.x - v.x) < EPS && std::abs(p.y - v.y) < EPS) {
            return true; // vertex counts as inside
        }
    }
 
    /* ray–edge crossings */
    int crossings = 0;
    for (std::size_t i = 0; i < n; ++i) {
        const vec2 &a = poly[i];
        const vec2 &b = poly[(i + 1) % n];
 
        if ((a.y > p.y) != (b.y > p.y)) {
 
            float x_hit = a.x + (p.y - a.y) * (b.x - a.x) / (b.y - a.y);
 
            if (x_hit >= p.x - EPS) {
                ++crossings;
            }
        }
    }
 
    return (crossings & 1) == 1;
}
 
helios::ProgressBar::ProgressBar(size_t total, int width, bool enable, const std::string &progress_message) : total_steps(total), current_step(0), bar_width(width), enabled(enable), message(progress_message) {
}
 
void helios::ProgressBar::update() {
    current_step++;
    double progress = (double) current_step / total_steps;
 
    if (enabled) {
        int filled = (int) (progress * bar_width);
 
        std::cout << "\r" << message << ": [";
        for (int i = 0; i < bar_width; ++i) {
            if (i < filled)
                std::cout << "=";
            else if (i == filled)
                std::cout << ">";
            else
                std::cout << " ";
        }
        std::cout << "] " << (int) (progress * 100) << "% (" << current_step << "/" << total_steps << ")";
        std::cout.flush();
 
        if (current_step >= total_steps) {
            std::cout << std::endl;
        }
    }
 
    if (callback) {
        callback(static_cast<float>(progress), message);
    }
}
 
void helios::ProgressBar::update(size_t step_number) {
    current_step = step_number;
    if (current_step > total_steps) {
        current_step = total_steps;
    }
 
    double progress = (double) current_step / total_steps;
 
    if (enabled) {
        int filled = (int) (progress * bar_width);
 
        std::cout << "\r" << message << ": [";
        for (int i = 0; i < bar_width; ++i) {
            if (i < filled)
                std::cout << "=";
            else if (i == filled)
                std::cout << ">";
            else
                std::cout << " ";
        }
        std::cout << "] " << (int) (progress * 100) << "% (" << current_step << "/" << total_steps << ")";
        std::cout.flush();
 
        if (current_step >= total_steps) {
            std::cout << std::endl;
        }
    }
 
    if (callback) {
        callback(static_cast<float>(progress), message);
    }
}
 
void helios::ProgressBar::finish() {
    if (enabled && current_step < total_steps) {
        current_step = total_steps;
        update(current_step);
    }
}
 
void helios::ProgressBar::setEnabled(bool enable) {
    enabled = enable;
}
 
bool helios::ProgressBar::isEnabled() const {
    return enabled;
}
 
void helios::ProgressBar::setCallback(std::function<void(float, const std::string&)> cb) {
    callback = std::move(cb);
}
 
void helios::wait(float seconds) {
    int msec = (int) lround(seconds * 1000.f);
    std::this_thread::sleep_for(std::chrono::milliseconds(msec));
}
 
void helios::makeRotationMatrix(const float rotation, const char *axis, float (&T)[16]) {
    float sx = sin(rotation);
    float cx = cos(rotation);
 
    if (strcmp(axis, "x") == 0) {
        T[0] = 1.f; //(0,0)
        T[1] = 0.f; //(0,1)
        T[2] = 0.f; //(0,2)
        T[3] = 0.f; //(0,3)
        T[4] = 0.f; //(1,0)
        T[5] = cx; //(1,1)
        T[6] = -sx; //(1,2)
        T[7] = 0.f; //(1,3)
        T[8] = 0.f; //(2,0)
        T[9] = sx; //(2,1)
        T[10] = cx; //(2,2)
        T[11] = 0.f; //(2,3)
    } else if (strcmp(axis, "y") == 0) {
        T[0] = cx; //(0,0)
        T[1] = 0.f; //(0,1)
        T[2] = sx; //(0,2)
        T[3] = 0.f; //(0,3)
        T[4] = 0.f; //(1,0)
        T[5] = 1.f; //(1,1)
        T[6] = 0.f; //(1,2)
        T[7] = 0.f; //(1,3)
        T[8] = -sx; //(2,0)
        T[9] = 0.f; //(2,1)
        T[10] = cx; //(2,2)
        T[11] = 0.f; //(2,3)
    } else if (strcmp(axis, "z") == 0) {
        T[0] = cx; //(0,0)
        T[1] = -sx; //(0,1)
        T[2] = 0.f; //(0,2)
        T[3] = 0.f; //(0,3)
        T[4] = sx; //(1,0)
        T[5] = cx; //(1,1)
        T[6] = 0.f; //(1,2)
        T[7] = 0.f; //(1,3)
        T[8] = 0.f; //(2,0)
        T[9] = 0.f; //(2,1)
        T[10] = 1.f; //(2,2)
        T[11] = 0.f; //(2,3)
    } else {
        helios_runtime_error("ERROR (makeRotationMatrix): Rotation axis should be one of x, y, or z.");
    }
    T[12] = T[13] = T[14] = 0.f;
    T[15] = 1.f;
}
 
void helios::makeRotationMatrix(float rotation, const helios::vec3 &axis, float (&T)[16]) {
    vec3 u = axis;
    u.normalize();
 
    float sx = sin(rotation);
    float cx = cos(rotation);
 
    T[0] = cx + u.x * u.x * (1.f - cx); //(0,0)
    T[1] = u.x * u.y * (1.f - cx) - u.z * sx; //(0,1)
    T[2] = u.x * u.z * (1.f - cx) + u.y * sx; //(0,2)
    T[3] = 0.f; //(0,3)
    T[4] = u.y * u.x * (1.f - cx) + u.z * sx; //(1,0)
    T[5] = cx + u.y * u.y * (1.f - cx); //(1,1)
    T[6] = u.y * u.z * (1.f - cx) - u.x * sx; //(1,2)
    T[7] = 0.f; //(1,3)
    T[8] = u.z * u.x * (1.f - cx) - u.y * sx; //(2,0)
    T[9] = u.z * u.y * (1.f - cx) + u.x * sx; //(2,1)
    T[10] = cx + u.z * u.z * (1.f - cx); //(2,2)
    T[11] = 0.f; //(2,3)
 
    T[12] = T[13] = T[14] = 0.f;
    T[15] = 1.f;
}
 
void helios::makeRotationMatrix(float rotation, const helios::vec3 &origin, const helios::vec3 &axis, float (&T)[16]) {
    // Construct inverse translation matrix to translate back to the origin
    float Ttrans[16];
    makeIdentityMatrix(Ttrans);
 
    Ttrans[3] = -origin.x; //(0,3)
    Ttrans[7] = -origin.y; //(1,3)
    Ttrans[11] = -origin.z; //(2,3)
 
    // Construct rotation matrix
    vec3 u = axis;
    u.normalize();
 
    float sx = sin(rotation);
    float cx = cos(rotation);
 
    float Trot[16];
    makeIdentityMatrix(Trot);
 
    Trot[0] = cx + u.x * u.x * (1.f - cx); //(0,0)
    Trot[1] = u.x * u.y * (1.f - cx) - u.z * sx; //(0,1)
    Trot[2] = u.x * u.z * (1.f - cx) + u.y * sx; //(0,2)
    Trot[3] = 0.f; //(0,3)
    Trot[4] = u.y * u.x * (1.f - cx) + u.z * sx; //(1,0)
    Trot[5] = cx + u.y * u.y * (1.f - cx); //(1,1)
    Trot[6] = u.y * u.z * (1.f - cx) - u.x * sx; //(1,2)
    Trot[7] = 0.f; //(1,3)
    Trot[8] = u.z * u.x * (1.f - cx) - u.y * sx; //(2,0)
    Trot[9] = u.z * u.y * (1.f - cx) + u.x * sx; //(2,1)
    Trot[10] = cx + u.z * u.z * (1.f - cx); //(2,2)
    Trot[11] = 0.f; //(2,3)
 
    // Multiply first two matrices and store in 'T'
    matmult(Trot, Ttrans, T);
 
    // Construct transformation matrix to translate back to 'origin'
    Ttrans[3] = origin.x; //(0,3)
    Ttrans[7] = origin.y; //(1,3)
    Ttrans[11] = origin.z; //(2,3)
 
    matmult(Ttrans, T, T);
}
 
void helios::makeTranslationMatrix(const helios::vec3 &translation, float (&T)[16]) {
    T[0] = 1.f; //(0,0)
    T[1] = 0.f; //(0,1)
    T[2] = 0.f; //(0,2)
    T[3] = translation.x; //(0,3)
    T[4] = 0.f; //(1,0)
    T[5] = 1.f; //(1,1)
    T[6] = 0.f; //(1,2)
    T[7] = translation.y; //(1,3)
    T[8] = 0.f; //(2,0)
    T[9] = 0.f; //(2,1)
    T[10] = 1.f; //(2,2)
    T[11] = translation.z; //(2,3)
    T[12] = 0.f; //(3,0)
    T[13] = 0.f; //(3,1)
    T[14] = 0.f; //(3,2)
    T[15] = 1.f; //(3,3)
}
 
void helios::makeScaleMatrix(const helios::vec3 &scale, float (&transform)[16]) {
    transform[0] = scale.x; //(0,0)
    transform[1] = 0.f; //(0,1)
    transform[2] = 0.f; //(0,2)
    transform[3] = 0.f; //(0,3)
    transform[4] = 0.f; //(1,0)
    transform[5] = scale.y; //(1,1)
    transform[6] = 0.f; //(1,2)
    transform[7] = 0.f; //(1,3)
    transform[8] = 0.f; //(2,0)
    transform[9] = 0.f; //(2,1)
    transform[10] = scale.z; //(2,2)
    transform[11] = 0.f; //(2,3)
    transform[12] = 0.f; //(3,0)
    transform[13] = 0.f; //(3,1)
    transform[14] = 0.f; //(3,2)
    transform[15] = 1.f; //(3,3)
}
 
void helios::makeScaleMatrix(const helios::vec3 &scale, const helios::vec3 &point, float (&transform)[16]) {
    transform[0] = scale.x; //(0,0)
    transform[1] = 0.f; //(0,1)
    transform[2] = 0.f; //(0,2)
    transform[3] = point.x * (1 - scale.x); //(0,3)
    transform[4] = 0.f; //(1,0)
    transform[5] = scale.y; //(1,1)
    transform[6] = 0.f; //(1,2)
    transform[7] = point.y * (1 - scale.y); //(1,3)
    transform[8] = 0.f; //(2,0)
    transform[9] = 0.f; //(2,1)
    transform[10] = scale.z; //(2,2)
    transform[11] = point.z * (1 - scale.z); //(2,3)
    transform[12] = 0.f; //(3,0)
    transform[13] = 0.f; //(3,1)
    transform[14] = 0.f; //(3,2)
    transform[15] = 1.f; //(3,3)
}
 
void helios::matmult(const float ML[16], const float MR[16], float (&T)[16]) {
    float M[16] = {0.f};
 
    for (int i = 0; i < 4; i++) {
        for (int j = 0; j < 4; j++) {
            for (int k = 0; k < 4; k++) {
                M[4 * i + j] = M[4 * i + j] + ML[4 * i + k] * MR[4 * k + j];
            }
        }
    }
 
    for (int i = 0; i < 16; i++) {
        T[i] = M[i];
    }
}
 
void helios::vecmult(const float M[16], const helios::vec3 &v3, helios::vec3 &result) {
    float v[4] = {v3.x, v3.y, v3.z, 1.f};
 
    float V[4] = {0.f};
 
    for (int i = 0; i < 4; ++i) {
        for (int k = 0; k < 4; ++k) {
            V[i] += M[4 * i + k] * v[k];
        }
    }
 
    result.x = V[0];
    result.y = V[1];
    result.z = V[2];
}
 
void helios::vecmult(const float M[16], const float v[3], float (&result)[3]) {
    float V[4] = {0.f};
    float v4[4] = {v[0], v[1], v[2], 1.f};
 
    for (int j = 0; j < 4; j++) {
        for (int k = 0; k < 4; k++) {
            V[j] = V[j] + v4[k] * M[k + 4 * j];
        }
    }
 
    for (int i = 0; i < 3; i++) {
        result[i] = V[i];
    }
}
 
void helios::makeIdentityMatrix(float (&T)[16]) {
    /* [0,0] */
    T[0] = 1.f;
    /* [0,1] */
    T[1] = 0.f;
    /* [0,2] */
    T[2] = 0.f;
    /* [0,3] */
    T[3] = 0.f;
    /* [1,0] */
    T[4] = 0.f;
    /* [1,1] */
    T[5] = 1.f;
    /* [1,2] */
    T[6] = 0.f;
    /* [1,3] */
    T[7] = 0.f;
    /* [2,0] */
    T[8] = 0.f;
    /* [2,1] */
    T[9] = 0.f;
    /* [2,2] */
    T[10] = 1.f;
    /* [2,3] */
    T[11] = 0.f;
    /* [3,0] */
    T[12] = 0.f;
    /* [3,1] */
    T[13] = 0.f;
    /* [3,2] */
    T[14] = 0.f;
    /* [3,3] */
    T[15] = 1.f;
}
 
float helios::deg2rad(float deg) {
    return deg * float(M_PI) / 180.f;
}
 
float helios::rad2deg(float rad) {
    return rad * 180.f / float(M_PI);
}
 
float helios::atan2_2pi(float y, float x) {
    float v = 0;
 
    if (x > 0.f) {
        v = atanf(y / x);
    }
    if (y >= 0.f && x < 0.f) {
        v = float(M_PI) + atanf(y / x);
    }
    if (y < 0.f && x < 0.f) {
        v = -float(M_PI) + atanf(y / x);
    }
    if (y > 0.f && x == 0.f) {
        v = 0.5f * float(M_PI);
    }
    if (y < 0.f && x == 0.f) {
        v = -0.5f * float(M_PI);
    }
    if (v < 0.f) {
        v = v + 2.f * float(M_PI);
    }
    return v;
}
 
SphericalCoord helios::cart2sphere(const vec3 &Cartesian) {
    float radius = sqrtf(Cartesian.x * Cartesian.x + Cartesian.y * Cartesian.y + Cartesian.z * Cartesian.z);
 
    // Add small epsilon to prevent singularity when vector is exactly vertical (x=0, y=0)
    // This prevents gimbal lock for cameras pointing straight up/down
    // Use positive y offset so atan2(0, eps) gives azimuth = 0 (pointing in +y direction)
    float x_safe = Cartesian.x;
    float y_safe = Cartesian.y;
    if (fabsf(x_safe) < 1e-7f && fabsf(y_safe) < 1e-7f) {
        y_safe = 1e-7f; // Positive offset gives azimuth = 0 (+y direction)
    }
 
    return {radius, asin_safe(Cartesian.z / radius), atan2_2pi(x_safe, y_safe)};
}
 
vec3 helios::sphere2cart(const SphericalCoord &Spherical) {
    return {Spherical.radius * cosf(Spherical.elevation) * sinf(Spherical.azimuth), Spherical.radius * cosf(Spherical.elevation) * cosf(Spherical.azimuth), Spherical.radius * sinf(Spherical.elevation)};
}
 
vec2 helios::string2vec2(const char *str) {
    float o[2];
    std::string tmp;
 
    std::istringstream stream(str);
    int c = 0;
    while (stream >> tmp && c < 2) {
        if (!parse_float(tmp, o[c])) {
            helios_runtime_error("ERROR (string2vec2): Invalid float value '" + tmp + "' in input string '" + std::string(str) + "'");
        }
        c++;
    }
 
    if (c < 2) {
        helios_runtime_error("ERROR (string2vec2): Insufficient values in input string '" + std::string(str) + "'. Expected 2 values, got " + std::to_string(c));
    }
 
    return make_vec2(o[0], o[1]);
}
 
vec3 helios::string2vec3(const char *str) {
    float o[3];
    std::string tmp;
 
    std::istringstream stream(str);
    int c = 0;
    while (stream >> tmp && c < 3) {
        if (!parse_float(tmp, o[c])) {
            helios_runtime_error("ERROR (string2vec3): Invalid float value '" + tmp + "' in input string '" + std::string(str) + "'");
        }
        c++;
    }
 
    if (c < 3) {
        helios_runtime_error("ERROR (string2vec3): Insufficient values in input string '" + std::string(str) + "'. Expected 3 values, got " + std::to_string(c));
    }
 
    return make_vec3(o[0], o[1], o[2]);
}
 
vec4 helios::string2vec4(const char *str) {
    float o[4];
    std::string tmp;
 
    std::istringstream stream(str);
    int c = 0;
    while (stream >> tmp && c < 4) {
        if (!parse_float(tmp, o[c])) {
            helios_runtime_error("ERROR (string2vec4): Invalid float value '" + tmp + "' in input string '" + std::string(str) + "'");
        }
        c++;
    }
 
    if (c < 4) {
        helios_runtime_error("ERROR (string2vec4): Insufficient values in input string '" + std::string(str) + "'. Expected 4 values, got " + std::to_string(c));
    }
 
    return make_vec4(o[0], o[1], o[2], o[3]);
}
 
int2 helios::string2int2(const char *str) {
    int o[2];
    std::string tmp;
 
    std::istringstream stream(str);
    int c = 0;
    while (stream >> tmp && c < 2) {
        if (!parse_int(tmp, o[c])) {
            helios_runtime_error("ERROR (string2int2): Invalid int value '" + tmp + "' in input string '" + std::string(str) + "'");
        }
        c++;
    }
 
    if (c < 2) {
        helios_runtime_error("ERROR (string2int2): Insufficient values in input string '" + std::string(str) + "'. Expected 2 values, got " + std::to_string(c));
    }
 
    return make_int2(o[0], o[1]);
}
 
int3 helios::string2int3(const char *str) {
    int o[3];
    std::string tmp;
 
    std::istringstream stream(str);
    int c = 0;
    while (stream >> tmp && c < 3) {
        if (!parse_int(tmp, o[c])) {
            helios_runtime_error("ERROR (string2int3): Invalid int value '" + tmp + "' in input string '" + std::string(str) + "'");
        }
        c++;
    }
 
    if (c < 3) {
        helios_runtime_error("ERROR (string2int3): Insufficient values in input string '" + std::string(str) + "'. Expected 3 values, got " + std::to_string(c));
    }
 
    return make_int3(o[0], o[1], o[2]);
}
 
int4 helios::string2int4(const char *str) {
    int o[4];
    std::string tmp;
 
    std::istringstream stream(str);
    int c = 0;
    while (stream >> tmp && c < 4) {
        if (!parse_int(tmp, o[c])) {
            helios_runtime_error("ERROR (string2int4): Invalid int value '" + tmp + "' in input string '" + std::string(str) + "'");
        }
        c++;
    }
 
    if (c < 4) {
        helios_runtime_error("ERROR (string2int4): Insufficient values in input string '" + std::string(str) + "'. Expected 4 values, got " + std::to_string(c));
    }
 
    return make_int4(o[0], o[1], o[2], o[3]);
}
 
RGBAcolor helios::string2RGBcolor(const char *str) {
    float o[4] = {0, 0, 0, 1}; // Keep default alpha of 1
    std::string tmp;
 
    std::istringstream stream(str);
    int c = 0;
    while (stream >> tmp) {
        if (c >= 4) {
            helios_runtime_error("ERROR (string2RGBcolor): Too many values in input string '" + std::string(str) + "'. Expected at most 4 values (RGBA), but found additional value '" + tmp + "'");
        }
 
        if (!parse_float(tmp, o[c])) {
            helios_runtime_error("ERROR (string2RGBcolor): Invalid float value '" + tmp + "' in input string '" + std::string(str) + "'");
        }
        c++;
    }
 
    if (c < 3) {
        helios_runtime_error("ERROR (string2RGBcolor): Insufficient values in input string '" + std::string(str) + "'. Expected at least 3 values (RGB), got " + std::to_string(c));
    }
 
    return make_RGBAcolor(o[0], o[1], o[2], o[3]);
}
 
bool helios::parse_float(const std::string &input_string, float &converted_float) {
    try {
        size_t read = 0;
        std::string str = trim_whitespace(input_string);
        double converted_double = std::stod(str, &read);
        converted_float = (float) converted_double;
        if (str.size() != read)
            return false;
    } catch (std::invalid_argument &e) {
        return false;
    }
    return true;
}
 
bool helios::parse_double(const std::string &input_string, double &converted_double) {
    try {
        size_t read = 0;
        std::string str = trim_whitespace(input_string);
        converted_double = std::stod(str, &read);
        if (str.size() != read)
            return false;
    } catch (std::invalid_argument &e) {
        return false;
    }
    return true;
}
 
bool helios::parse_int(const std::string &input_string, int &converted_int) {
    try {
        size_t read = 0;
        std::string str = trim_whitespace(input_string);
        converted_int = std::stoi(str, &read);
        if (str.size() != read)
            return false;
    } catch (std::invalid_argument &e) {
        return false;
    }
    return true;
}
 
bool helios::parse_int2(const std::string &input_string, int2 &converted_int2) {
    std::istringstream vecstream(input_string);
    std::vector<std::string> tmp_s(2);
    vecstream >> tmp_s[0];
    vecstream >> tmp_s[1];
    int2 tmp;
    if (!parse_int(tmp_s[0], tmp.x) || !parse_int(tmp_s[1], tmp.y)) {
        return false;
    } else {
        converted_int2 = tmp;
    }
    return true;
}
 
bool helios::parse_int3(const std::string &input_string, int3 &converted_int3) {
    std::istringstream vecstream(input_string);
    std::vector<std::string> tmp_s(3);
    vecstream >> tmp_s[0];
    vecstream >> tmp_s[1];
    vecstream >> tmp_s[2];
    int3 tmp;
    if (!parse_int(tmp_s[0], tmp.x) || !parse_int(tmp_s[1], tmp.y) || !parse_int(tmp_s[2], tmp.z)) {
        return false;
    } else {
        converted_int3 = tmp;
    }
    return true;
}
 
bool helios::parse_uint(const std::string &input_string, uint &converted_uint) {
    try {
        size_t read = 0;
        std::string str = trim_whitespace(input_string);
        int converted_int = std::stoi(str, &read);
        if (str.size() != read || converted_int < 0) {
            return false;
        } else {
            converted_uint = (uint) converted_int;
        }
    } catch (std::invalid_argument &e) {
        return false;
    }
    return true;
}
 
bool helios::parse_vec2(const std::string &input_string, vec2 &converted_vec2) {
    std::istringstream vecstream(input_string);
    std::vector<std::string> tmp_s(2);
    vecstream >> tmp_s[0];
    vecstream >> tmp_s[1];
    vec2 tmp;
    if (!parse_float(tmp_s[0], tmp.x) || !parse_float(tmp_s[1], tmp.y)) {
        return false;
    } else {
        converted_vec2 = tmp;
    }
    return true;
}
 
bool helios::parse_vec3(const std::string &input_string, vec3 &converted_vec3) {
    std::istringstream vecstream(input_string);
    std::vector<std::string> tmp_s(3);
    vecstream >> tmp_s[0];
    vecstream >> tmp_s[1];
    vecstream >> tmp_s[2];
    vec3 tmp;
    if (!parse_float(tmp_s[0], tmp.x) || !parse_float(tmp_s[1], tmp.y) || !parse_float(tmp_s[2], tmp.z)) {
        return false;
    } else {
        converted_vec3 = tmp;
    }
    return true;
}
 
bool helios::parse_RGBcolor(const std::string &input_string, RGBcolor &converted_rgb) {
    std::istringstream vecstream(input_string);
    std::vector<std::string> tmp_s(3);
    vecstream >> tmp_s[0];
    vecstream >> tmp_s[1];
    vecstream >> tmp_s[2];
    RGBcolor tmp;
    if (!parse_float(tmp_s[0], tmp.r) || !parse_float(tmp_s[1], tmp.g) || !parse_float(tmp_s[2], tmp.b)) {
        return false;
    } else {
        if (tmp.r < 0 || tmp.g < 0 || tmp.b < 0 || tmp.r > 1.f || tmp.g > 1.f || tmp.b > 1.f) {
            return false;
        }
        converted_rgb = tmp;
    }
    return true;
}
 
bool helios::open_xml_file(const std::string &xml_file, pugi::xml_document &xmldoc, std::string &error_string) {
    const std::string &fn = xml_file;
    std::string ext = getFileExtension(xml_file);
    if (ext != ".xml" && ext != ".XML") {
        error_string = "XML file " + fn + " is not XML format.";
        return false;
    }
 
    // Resolve file path using the build directory path resolution system
    std::filesystem::path resolvedPath;
    try {
        resolvedPath = resolveFilePath(xml_file);
    } catch (const std::runtime_error &e) {
        error_string = std::string(e.what());
        return false;
    }
 
    // load file
    pugi::xml_parse_result load_result = xmldoc.load_file(resolvedPath.string().c_str());
 
    // error checking
    if (!load_result) {
        error_string = "XML file " + xml_file + " parsed with errors: " + load_result.description();
        return false;
    }
 
    pugi::xml_node helios = xmldoc.child("helios");
 
    if (helios.empty()) {
        error_string = "XML file " + xml_file + " does not have tag '<helios> ... </helios>' bounding all other tags.";
        return false;
    }
 
    return true;
}
 
int helios::parse_xml_tag_int(const pugi::xml_node &node, const std::string &tag, const std::string &calling_function) {
    std::string value_string = node.child_value();
    if (value_string.empty()) {
        return 0;
    }
    int value;
    if (!parse_int(value_string, value)) {
        helios_runtime_error("ERROR (" + calling_function + "): Could not parse tag '" + tag + "' integer value.");
    }
    return value;
}
 
float helios::parse_xml_tag_float(const pugi::xml_node &node, const std::string &tag, const std::string &calling_function) {
    std::string value_string = node.child_value();
    if (value_string.empty()) {
        return 0;
    }
    float value;
    if (!parse_float(value_string, value)) {
        helios_runtime_error("ERROR (" + calling_function + "): Could not parse tag '" + tag + "' float value.");
    }
    return value;
}
 
vec2 helios::parse_xml_tag_vec2(const pugi::xml_node &node, const std::string &tag, const std::string &calling_function) {
    std::string value_string = node.child_value();
    if (value_string.empty()) {
        return {0, 0};
    }
    vec2 value;
    if (!parse_vec2(value_string, value)) {
        helios_runtime_error("ERROR (" + calling_function + "): Could not parse tag '" + tag + "' vec2 value.");
    }
    return value;
}
 
vec3 helios::parse_xml_tag_vec3(const pugi::xml_node &node, const std::string &tag, const std::string &calling_function) {
    std::string value_string = node.child_value();
    if (value_string.empty()) {
        return {0, 0, 0};
    }
    vec3 value;
    if (!parse_vec3(value_string, value)) {
        helios_runtime_error("ERROR (" + calling_function + "): Could not parse tag '" + tag + "' vec3 value.");
    }
    return value;
}
 
std::string helios::parse_xml_tag_string(const pugi::xml_node &node, const std::string &tag, const std::string &calling_function) {
    return deblank(node.child_value());
}
 
std::string helios::deblank(const char *input) {
    std::string out;
    out.reserve(std::strlen(input));
    for (const char *p = input; *p; ++p) {
        if (*p != ' ') {
            out.push_back(*p);
        }
    }
    return out;
}
 
std::string helios::deblank(const std::string &input) {
    return deblank(input.c_str());
}
 
std::string helios::trim_whitespace(const std::string &input) {
    static const std::string WHITESPACE = " \n\r\t\f\v";
 
    // Find first non-whitespace character
    size_t start = input.find_first_not_of(WHITESPACE);
    if (start == std::string::npos) {
        return ""; // String is all whitespace
    }
 
    // Find last non-whitespace character
    size_t end = input.find_last_not_of(WHITESPACE);
 
    // Return the trimmed substring
    return input.substr(start, end - start + 1);
}
 
std::vector<std::string> helios::separate_string_by_delimiter(const std::string &inputstring, const std::string &delimiter) {
    std::vector<std::string> separated_string;
 
    // Handle empty delimiter case
    if (delimiter.empty()) {
        helios_runtime_error("ERROR (helios::separate_string_by_delimiter): Delimiter cannot be an empty string.");
    }
 
    size_t pos = 0;
    size_t found;
    size_t max_characters = inputstring.size();
    size_t iter = 0;
    while ((found = inputstring.find(delimiter, pos)) != std::string::npos && iter <= max_characters) {
        separated_string.push_back(trim_whitespace(inputstring.substr(pos, found - pos)));
        pos = found + delimiter.size();
        iter++;
    }
 
    // add the remaining part (including case of no delimiter found)
    separated_string.push_back(trim_whitespace(inputstring.substr(pos)));
 
    return separated_string;
}
 
float helios::sum(const std::vector<float> &vect) {
    if (vect.empty()) {
        helios_runtime_error("ERROR (sum): Vector is empty.");
    }
 
    float m = 0;
    for (float i: vect) {
        m += i;
    }
 
    return m;
}
 
float helios::mean(const std::vector<float> &vect) {
    if (vect.empty()) {
        helios_runtime_error("ERROR (mean): Vector is empty.");
    }
 
    float m = 0;
    for (float i: vect) {
        m += i;
    }
    m /= float(vect.size());
 
    return m;
}
 
float helios::min(const std::vector<float> &vect) {
    if (vect.empty()) {
        helios_runtime_error("ERROR (min): Vector is empty.");
    }
 
    return *std::min_element(vect.begin(), vect.end());
}
 
int helios::min(const std::vector<int> &vect) {
    if (vect.empty()) {
        helios_runtime_error("ERROR (min): Vector is empty.");
    }
 
    return *std::min_element(vect.begin(), vect.end());
}
 
vec3 helios::min(const std::vector<vec3> &vect) {
    if (vect.empty()) {
        helios_runtime_error("ERROR (min): Vector is empty.");
    }
 
    vec3 vmin = vect.at(0);
 
    for (int i = 1; i < vect.size(); i++) {
        if (vect.at(i).x < vmin.x) {
            vmin.x = vect.at(i).x;
        }
        if (vect.at(i).y < vmin.y) {
            vmin.y = vect.at(i).y;
        }
        if (vect.at(i).z < vmin.z) {
            vmin.z = vect.at(i).z;
        }
    }
 
    return vmin;
}
 
float helios::max(const std::vector<float> &vect) {
    if (vect.empty()) {
        helios_runtime_error("ERROR (max): Vector is empty.");
    }
 
    return *std::max_element(vect.begin(), vect.end());
}
 
int helios::max(const std::vector<int> &vect) {
    if (vect.empty()) {
        helios_runtime_error("ERROR (max): Vector is empty.");
    }
 
    return *std::max_element(vect.begin(), vect.end());
}
 
vec3 helios::max(const std::vector<vec3> &vect) {
    if (vect.empty()) {
        helios_runtime_error("ERROR (max): Vector is empty.");
    }
 
    vec3 vmax = vect.at(0);
 
    for (int i = 1; i < vect.size(); i++) {
        if (vect.at(i).x > vmax.x) {
            vmax.x = vect.at(i).x;
        }
        if (vect.at(i).y > vmax.y) {
            vmax.y = vect.at(i).y;
        }
        if (vect.at(i).z > vmax.z) {
            vmax.z = vect.at(i).z;
        }
    }
 
    return vmax;
}
 
float helios::stdev(const std::vector<float> &vect) {
    if (vect.empty()) {
        helios_runtime_error("ERROR (stdev): Vector is empty.");
    }
 
    size_t size = vect.size();
 
    float m = 0;
    for (float i: vect) {
        m += i;
    }
    m /= float(size);
 
    float stdev = 0;
    for (float i: vect) {
        stdev += powf(i - m, 2.0);
    }
 
    return sqrtf(stdev / float(size));
}
 
float helios::median(std::vector<float> vect) {
    if (vect.empty()) {
        helios_runtime_error("ERROR (median): Vector is empty.");
    }
 
    size_t size = vect.size();
 
    sort(vect.begin(), vect.end());
 
    size_t middle_index = size / 2;
 
    float median;
    if (size % 2 == 0) {
        median = (vect.at(middle_index) + vect.at(middle_index - 1)) / 2.f;
    } else {
        median = vect.at(middle_index);
    }
    return median;
}
 
Date helios::CalendarDay(int Julian_day, int year) {
    // -----------------------------  input checks  ----------------------------
    if (Julian_day < 1 || Julian_day > 366)
        helios_runtime_error("ERROR (CalendarDay): Julian day out of range [1–366].");
 
    if (year < 1000)
        helios_runtime_error("ERROR (CalendarDay): Year must be given in YYYY format.");
 
    const bool leap = (year % 4 == 0 && year % 100 != 0) || // divisible by 4 but not by 100
                      (year % 400 == 0); // or divisible by 400
 
    if (!leap && Julian_day == 366)
        helios_runtime_error("ERROR (CalendarDay): Day 366 occurs only in leap years.");
 
    // -------------------  month lengths for the chosen year  -----------------
    // Index 0 = January, …, 11 = December
    int month_lengths[12] = {31, 28, 31, 30, 31, 30, 31, 31, 30, 31, 30, 31};
    if (leap) // adjust February
        month_lengths[1] = 29;
 
    // ---------------------------  computation  ------------------------------
    int d_remaining = Julian_day; // days still to account for
    int month = 1; // 1‑based calendar month
 
    // subtract complete months until the remainder lies in the current month
    for (int i = 0; i < 12; ++i) {
        if (d_remaining > month_lengths[i]) {
            d_remaining -= month_lengths[i];
            ++month;
        } else {
            break;
        }
    }
 
    // d_remaining is now the calendar day of the computed month
    return make_Date(d_remaining, month, year);
}
 
 
int helios::JulianDay(int day, int month, int year) {
    return JulianDay(make_Date(day, month, year));
}
 
int helios::JulianDay(const Date &date) {
    int day = date.day;
    int month = date.month;
    int year = date.year;
 
    // Validate inputs
    if (month < 1 || month > 12) {
        helios_runtime_error("ERROR (JulianDay): Month of year is out of range (month of " + std::to_string(month) + " was given).");
    }
 
    // Get the correct number of days for the month (accounting for leap year in February)
    int daysInMonth[] = {0, 31, 28, 31, 30, 31, 30, 31, 31, 30, 31, 30, 31};
 
    // Correct leap year calculation
    if (bool isLeapYear = (year % 4 == 0 && year % 100 != 0) || (year % 400 == 0)) {
        daysInMonth[2] = 29;
    }
 
    if (day < 1 || day > daysInMonth[month]) {
        helios_runtime_error("ERROR (JulianDay): Day of month is out of range (day of " + std::to_string(day) + " was given for month " + std::to_string(month) + ").");
    }
 
    if (year < 1000) {
        helios_runtime_error("ERROR (JulianDay): Year should be specified in YYYY format.");
    }
 
    // Calculate day of year
    int dayOfYear = day;
    for (int m = 1; m < month; m++) {
        dayOfYear += daysInMonth[m];
    }
 
    return dayOfYear;
}
 
bool helios::PNGHasAlpha(const char *filename) {
    if (!filename) {
        helios_runtime_error("ERROR (PNGHasAlpha): Null filename provided.");
    }
 
    std::string fn(filename);
    auto dot_pos = fn.find_last_of('.');
    if (dot_pos == std::string::npos) {
        helios_runtime_error("ERROR (PNGHasAlpha): File " + fn + " has no extension.");
    }
    std::string ext = fn.substr(dot_pos + 1);
    if (ext != "png" && ext != "PNG") {
        helios_runtime_error("ERROR (PNGHasAlpha): File " + fn + " is not PNG format.");
    }
 
    // 3) Open file with RAII
    auto fileCloser = [](FILE *f) {
        if (f)
            std::fclose(f);
    };
    std::unique_ptr<FILE, decltype(fileCloser)> fp(std::fopen(fn.c_str(), "rb"), fileCloser);
    if (!fp) {
        helios_runtime_error("ERROR (PNGHasAlpha): File " + fn + " could not be opened for reading.");
    }
 
    // 4) Read & validate PNG signature
    unsigned char header[8];
    if (std::fread(header, 1, 8, fp.get()) != 8 || png_sig_cmp(header, 0, 8)) {
        helios_runtime_error("ERROR (PNGHasAlpha): File " + fn + " is not a valid PNG file.");
    }
 
    png_structp png_ptr = nullptr;
    png_infop info_ptr = nullptr;
 
    try {
        // 5) Create libpng read & info structs
        png_ptr = png_create_read_struct(PNG_LIBPNG_VER_STRING, nullptr, nullptr, nullptr);
        if (!png_ptr) {
            throw std::runtime_error("png_create_read_struct failed.");
        }
        info_ptr = png_create_info_struct(png_ptr);
        if (!info_ptr) {
            png_destroy_read_struct(&png_ptr, nullptr, nullptr);
            throw std::runtime_error("png_create_info_struct failed.");
        }
 
        // 6) Error handling via setjmp
        if (setjmp(png_jmpbuf(png_ptr))) {
            throw std::runtime_error("Error during PNG initialization.");
        }
 
        // 7) Initialize IO & read info
        png_init_io(png_ptr, fp.get());
        png_set_sig_bytes(png_ptr, 8);
        png_read_info(png_ptr, info_ptr);
 
        // 8) Inspect color type and tRNS chunk
        png_byte color_type = png_get_color_type(png_ptr, info_ptr);
        bool has_tRNS = png_get_valid(png_ptr, info_ptr, PNG_INFO_tRNS) != 0;
 
        // 9) Determine alpha presence
        bool has_alpha = ((color_type & PNG_COLOR_MASK_ALPHA) != 0) || has_tRNS;
 
        // 10) Clean up libpng structs
        png_destroy_read_struct(&png_ptr, &info_ptr, nullptr);
 
        return has_alpha;
    } catch (const std::exception &e) {
        // Ensure libpng structs are freed on error
        if (png_ptr) {
            if (info_ptr)
                png_destroy_read_struct(&png_ptr, &info_ptr, nullptr);
            else
                png_destroy_read_struct(&png_ptr, nullptr, nullptr);
        }
        helios_runtime_error(std::string("ERROR (PNGHasAlpha): ") + e.what());
    }
 
    // Should never reach here
    return false;
}
 
std::vector<std::vector<bool>> helios::readPNGAlpha(const std::string &filename) {
    const std::string &fn = filename;
    auto dot = fn.find_last_of('.');
    if (dot == std::string::npos) {
        helios_runtime_error("ERROR (readPNGAlpha): File " + fn + " has no extension.");
    }
    std::string ext = fn.substr(dot + 1);
    std::transform(ext.begin(), ext.end(), ext.begin(), [](unsigned char c) { return std::tolower(c); });
    if (ext != "png") {
        helios_runtime_error("ERROR (readPNGAlpha): File " + fn + " is not PNG format.");
    }
 
    std::vector<std::vector<bool>> mask;
    png_structp png_ptr = nullptr;
    png_infop info_ptr = nullptr;
 
    try {
        // RAII for FILE*
        auto fileDeleter = [](FILE *f) {
            if (f)
                fclose(f);
        };
        std::unique_ptr<FILE, decltype(fileDeleter)> fp(fopen(filename.c_str(), "rb"), fileDeleter);
        if (!fp) {
            throw std::runtime_error("File " + filename + " could not be opened for reading.");
        }
 
        // Read & validate PNG signature
        unsigned char header[8];
        if (fread(header, 1, 8, fp.get()) != 8) {
            throw std::runtime_error("Failed to read PNG header from " + filename);
        }
        if (png_sig_cmp(header, 0, 8)) {
            throw std::runtime_error("File " + filename + " is not a valid PNG.");
        }
 
        // Create libpng structs
        png_ptr = png_create_read_struct(PNG_LIBPNG_VER_STRING, nullptr, nullptr, nullptr);
        if (!png_ptr) {
            throw std::runtime_error("png_create_read_struct failed.");
        }
 
        info_ptr = png_create_info_struct(png_ptr);
        if (!info_ptr) {
            png_destroy_read_struct(&png_ptr, nullptr, nullptr);
            throw std::runtime_error("png_create_info_struct failed.");
        }
 
        // libpng error handling
        if (setjmp(png_jmpbuf(png_ptr))) {
            throw std::runtime_error("Error during PNG initialization.");
        }
 
        png_init_io(png_ptr, fp.get());
        png_set_sig_bytes(png_ptr, 8);
        png_read_info(png_ptr, info_ptr);
 
        uint width = png_get_image_width(png_ptr, info_ptr);
        uint height = png_get_image_height(png_ptr, info_ptr);
        png_byte color_type = png_get_color_type(png_ptr, info_ptr);
        png_byte bit_depth = png_get_bit_depth(png_ptr, info_ptr);
        bool has_alpha = (color_type & PNG_COLOR_MASK_ALPHA) != 0 || png_get_valid(png_ptr, info_ptr, PNG_INFO_tRNS) != 0;
 
        mask.resize(height);
        for (uint i = 0; i < height; i++) {
            mask.at(i).resize(width);
        }
 
        if (!has_alpha) {
            for (uint j = 0; j < height; ++j) {
                std::fill(mask.at(j).begin(), mask.at(j).end(), true);
            }
            png_destroy_read_struct(&png_ptr, &info_ptr, nullptr);
            return mask;
        }
 
        // Apply transformations to ensure we get RGBA format (4 bytes per pixel)
        if (bit_depth == 16) {
            png_set_strip_16(png_ptr);
        }
        if (color_type == PNG_COLOR_TYPE_PALETTE) {
            png_set_palette_to_rgb(png_ptr);
        }
        if (color_type == PNG_COLOR_TYPE_GRAY && bit_depth < 8) {
            png_set_expand_gray_1_2_4_to_8(png_ptr);
        }
        if (png_get_valid(png_ptr, info_ptr, PNG_INFO_tRNS)) {
            png_set_tRNS_to_alpha(png_ptr);
        }
        // Only add filler if we don't already have alpha from tRNS
        if (!png_get_valid(png_ptr, info_ptr, PNG_INFO_tRNS) && (color_type == PNG_COLOR_TYPE_RGB || color_type == PNG_COLOR_TYPE_GRAY || color_type == PNG_COLOR_TYPE_PALETTE)) {
            png_set_filler(png_ptr, 0xFF, PNG_FILLER_AFTER);
        }
        if (color_type == PNG_COLOR_TYPE_GRAY || color_type == PNG_COLOR_TYPE_GRAY_ALPHA) {
            png_set_gray_to_rgb(png_ptr);
        }
 
        png_set_interlace_handling(png_ptr);
        png_read_update_info(png_ptr, info_ptr);
 
        // Prepare row pointers using RAII containers
        size_t rowbytes = png_get_rowbytes(png_ptr, info_ptr);
        std::vector<std::vector<png_byte>> row_data(height, std::vector<png_byte>(rowbytes));
        std::vector<png_bytep> row_pointers(height);
        for (uint y = 0; y < height; ++y) {
            row_pointers[y] = row_data[y].data();
        }
 
        // Read the image
        if (setjmp(png_jmpbuf(png_ptr))) {
            throw std::runtime_error("Error during PNG read.");
        }
        png_read_image(png_ptr, row_pointers.data());
 
        // Extract alpha mask
        for (uint j = 0; j < height; j++) {
            png_byte *row = row_pointers[j];
            for (uint i = 0; i < width; i++) {
                png_byte *ba = &(row[i * 4]);
                float alpha = ba[3];
                mask.at(j).at(i) = (alpha >= 250);
            }
        }
 
        png_destroy_read_struct(&png_ptr, &info_ptr, nullptr);
 
    } catch (const std::exception &e) {
        if (png_ptr) {
            png_destroy_read_struct(&png_ptr, info_ptr ? &info_ptr : nullptr, nullptr);
        }
        helios_runtime_error(std::string("ERROR (readPNGAlpha): ") + e.what());
    }
 
    return mask;
}
 
void helios::readPNG(const std::string &filename, uint &width, uint &height, std::vector<helios::RGBAcolor> &texture) {
    // 1) Safe extension check
    auto ext_pos = filename.find_last_of('.');
    if (ext_pos == std::string::npos) {
        helios_runtime_error("ERROR (readPNG): File " + filename + " has no extension.");
    }
    std::string ext = filename.substr(ext_pos + 1);
    std::transform(ext.begin(), ext.end(), ext.begin(), [](unsigned char c) { return std::tolower(c); });
    if (ext != "png") {
        helios_runtime_error("ERROR (readPNG): File " + filename + " is not PNG format.");
    }
 
    png_structp png_ptr = nullptr;
    png_infop info_ptr = nullptr;
 
    try {
        //
        // 2) RAII for FILE*
        //
        auto fileDeleter = [](FILE *f) {
            if (f)
                fclose(f);
        };
        std::unique_ptr<FILE, decltype(fileDeleter)> fp(fopen(filename.c_str(), "rb"), fileDeleter);
        if (!fp) {
            throw std::runtime_error("File " + filename + " could not be opened.");
        }
 
        // 3) Read & validate PNG signature
        unsigned char header[8];
        if (fread(header, 1, 8, fp.get()) != 8) {
            throw std::runtime_error("Failed to read PNG header from " + filename);
        }
        if (png_sig_cmp(header, 0, 8)) {
            throw std::runtime_error("File " + filename + " is not a valid PNG.");
        }
 
        // 4) Create libpng structs
        png_ptr = png_create_read_struct(PNG_LIBPNG_VER_STRING, nullptr, nullptr, nullptr);
        if (!png_ptr) {
            throw std::runtime_error("Failed to create PNG read struct.");
        }
        info_ptr = png_create_info_struct(png_ptr);
        if (!info_ptr) {
            png_destroy_read_struct(&png_ptr, nullptr, nullptr);
            throw std::runtime_error("Failed to create PNG info struct.");
        }
 
        // 5) libpng error handling
        if (setjmp(png_jmpbuf(png_ptr))) {
            throw std::runtime_error("Error during PNG initialization.");
        }
 
        // 6) Set up IO & read basic info
        png_init_io(png_ptr, fp.get());
        png_set_sig_bytes(png_ptr, 8);
        png_read_info(png_ptr, info_ptr);
 
        // 7) Transformations → strip 16-bit, expand palette/gray, add alpha
        png_byte bit_depth = png_get_bit_depth(png_ptr, info_ptr);
        png_byte color_type = png_get_color_type(png_ptr, info_ptr);
 
        if (bit_depth == 16) {
            png_set_strip_16(png_ptr);
        }
        if (color_type == PNG_COLOR_TYPE_PALETTE) {
            png_set_palette_to_rgb(png_ptr);
        }
        if (color_type == PNG_COLOR_TYPE_GRAY && bit_depth < 8) {
            png_set_expand_gray_1_2_4_to_8(png_ptr);
        }
        if (png_get_valid(png_ptr, info_ptr, PNG_INFO_tRNS)) {
            png_set_tRNS_to_alpha(png_ptr);
        }
        // Ensure we have RGBA - but only add filler if we don't already have alpha from tRNS
        if (!png_get_valid(png_ptr, info_ptr, PNG_INFO_tRNS) && (color_type == PNG_COLOR_TYPE_RGB || color_type == PNG_COLOR_TYPE_GRAY || color_type == PNG_COLOR_TYPE_PALETTE)) {
            png_set_filler(png_ptr, 0xFF, PNG_FILLER_AFTER);
        }
        if (color_type == PNG_COLOR_TYPE_GRAY || color_type == PNG_COLOR_TYPE_GRAY_ALPHA) {
            png_set_gray_to_rgb(png_ptr);
        }
 
        // 8) Handle interlacing
        png_set_interlace_handling(png_ptr);
 
        // 9) Apply transforms & re-fetch info
        png_read_update_info(png_ptr, info_ptr);
 
        // 10) Get & validate dimensions
        size_t w = png_get_image_width(png_ptr, info_ptr);
        size_t h = png_get_image_height(png_ptr, info_ptr);
        // Prevent overflow when resizing vectors
        constexpr size_t max_pixels = (std::numeric_limits<size_t>::max)() / sizeof(helios::RGBAcolor);
        if (w == 0 || h == 0 || w > max_pixels / h) {
            throw std::runtime_error("Invalid image dimensions: " + std::to_string(w) + "×" + std::to_string(h));
        }
        width = scast<uint>(w);
        height = scast<uint>(h);
 
        // 11) Prepare row pointers
        size_t rowbytes = png_get_rowbytes(png_ptr, info_ptr);
        if (rowbytes < width * 4) {
            throw std::runtime_error("Unexpected row size: " + std::to_string(rowbytes));
        }
        std::vector<std::vector<png_byte>> row_data(height, std::vector<png_byte>(rowbytes));
        std::vector<png_bytep> row_pointers(height);
        for (uint y = 0; y < height; ++y) {
            row_pointers[y] = row_data[y].data();
        }
 
        // 12) Read the image
        if (setjmp(png_jmpbuf(png_ptr))) {
            throw std::runtime_error("Error during PNG read.");
        }
        png_read_image(png_ptr, row_pointers.data());
 
        // 13) Convert into normalized RGBAcolor
        texture.resize(scast<size_t>(width) * height);
        for (uint y = 0; y < height; ++y) {
            png_bytep row = row_pointers[y];
            for (uint x = 0; x < width; ++x) {
                png_bytep px = row + x * 4;
                auto &c = texture[y * width + x];
                c.r = px[0] / 255.0f;
                c.g = px[1] / 255.0f;
                c.b = px[2] / 255.0f;
                c.a = px[3] / 255.0f;
            }
        }
    } catch (const std::exception &e) {
        // Clean up libpng structs on error
        if (png_ptr) {
            if (info_ptr)
                png_destroy_read_struct(&png_ptr, &info_ptr, nullptr);
            else
                png_destroy_read_struct(&png_ptr, nullptr, nullptr);
        }
        helios_runtime_error("ERROR (readPNG): " + std::string(e.what()));
    }
 
    // Normal cleanup
    if (png_ptr) {
        if (info_ptr)
            png_destroy_read_struct(&png_ptr, &info_ptr, nullptr);
        else
            png_destroy_read_struct(&png_ptr, nullptr, nullptr);
    }
}
 
 
void helios::writePNG(const std::string &filename, uint width, uint height, const std::vector<helios::RGBAcolor> &pixel_data) {
    FILE *fp = fopen(filename.c_str(), "wb");
    if (!fp) {
        helios_runtime_error("ERROR (writePNG): failed to open image file.");
    }
 
    png_structp png = png_create_write_struct(PNG_LIBPNG_VER_STRING, nullptr, nullptr, nullptr);
    if (!png) {
        helios_runtime_error("ERROR (writePNG): failed to create PNG write structure.");
    }
 
    png_infop info = png_create_info_struct(png);
    if (!info) {
        helios_runtime_error("ERROR (writePNG): failed to create PNG info structure.");
    }
 
    if (setjmp(png_jmpbuf(png))) {
        helios_runtime_error("ERROR (writePNG): init_io failed.");
    }
 
    png_init_io(png, fp);
 
    // Output is 8bit depth, RGBA format.
    png_set_IHDR(png, info, width, height, 8, PNG_COLOR_TYPE_RGBA, PNG_INTERLACE_NONE, PNG_COMPRESSION_TYPE_DEFAULT, PNG_FILTER_TYPE_DEFAULT);
    png_write_info(png, info);
 
    // To remove the alpha channel for PNG_COLOR_TYPE_RGB format,
    // Use png_set_filler().
    // png_set_filler(png, 0, PNG_FILLER_AFTER);
 
    std::vector<unsigned char *> row_pointers;
    row_pointers.resize(height);
 
    std::vector<std::vector<unsigned char>> data;
    data.resize(height);
 
    for (uint row = 0; row < height; row++) {
        data.at(row).resize(4 * width);
        for (uint col = 0; col < width; col++) {
            data.at(row).at(4 * col) = (unsigned char) round(clamp(pixel_data.at(row * width + col).r, 0.f, 1.f) * 255.f);
            data.at(row).at(4 * col + 1) = (unsigned char) round(clamp(pixel_data.at(row * width + col).g, 0.f, 1.f) * 255.f);
            data.at(row).at(4 * col + 2) = (unsigned char) round(clamp(pixel_data.at(row * width + col).b, 0.f, 1.f) * 255.f);
            data.at(row).at(4 * col + 3) = (unsigned char) round(clamp(pixel_data.at(row * width + col).a, 0.f, 1.f) * 255.f);
        }
        row_pointers.at(row) = &data.at(row).at(0);
    }
 
    png_write_image(png, &row_pointers.at(0));
    png_write_end(png, nullptr);
 
    fclose(fp);
 
    png_destroy_write_struct(&png, &info);
}
 
void helios::writePNG(const std::string &filename, uint width, uint height, const std::vector<unsigned char> &pixel_data) {
 
    // Convert pixel_data array into RGBcolor vector
 
    size_t pixels = width * height;
 
    std::vector<RGBAcolor> rgb_data;
    rgb_data.resize(pixels);
 
    size_t channels = pixel_data.size() / pixels;
 
    if (channels < 3) {
        helios_runtime_error("ERROR (writePNG): Pixel data must have at least 3 color channels");
    }
 
    // Convert pixel data into RGBA values
    for (size_t i = 0; i < pixels; i++) {
        rgb_data[i].r = float(pixel_data[i]) / 255.0f;
        rgb_data[i].g = float(pixel_data[i + pixels]) / 255.0f;
        rgb_data[i].b = float(pixel_data[i + 2 * pixels]) / 255.0f;
        rgb_data[i].a = channels > 3 ? float(pixel_data[i + 3 * pixels]) / 255.0f : 1.0f;
    }
 
    // Call RGB version of writePNG
    writePNG(filename, width, height, rgb_data);
}
 
 
METHODDEF(void) jpg_error_exit(j_common_ptr cinfo) {
    char buffer[JMSG_LENGTH_MAX];
    (*cinfo->err->format_message)(cinfo, buffer);
    throw std::runtime_error(buffer);
}
 
void helios::readJPEG(const std::string &filename, uint &width, uint &height, std::vector<helios::RGBcolor> &pixel_data) {
    auto file_extension = getFileExtension(filename);
    if (file_extension != ".jpg" && file_extension != ".JPG" && file_extension != ".jpeg" && file_extension != ".JPEG") {
        helios_runtime_error("ERROR (Context::readJPEG): File " + filename + " is not JPEG format.");
    }
 
    jpeg_decompress_struct cinfo{};
 
    jpeg_error_mgr jerr{};
    JSAMPARRAY buffer;
    int row_stride;
 
    std::unique_ptr<FILE, int (*)(FILE *)> infile(fopen(filename.c_str(), "rb"), fclose);
    if (!infile) {
        helios_runtime_error("ERROR (Context::readJPEG): File " + filename + " could not be opened. Check that the file exists and that you have permission to read it.");
    }
 
    cinfo.err = jpeg_std_error(&jerr);
    jerr.error_exit = jpg_error_exit;
 
    try {
        jpeg_create_decompress(&cinfo);
        jpeg_stdio_src(&cinfo, infile.get());
        (void) jpeg_read_header(&cinfo, (boolean) 1);
 
        (void) jpeg_start_decompress(&cinfo);
 
        row_stride = cinfo.output_width * cinfo.output_components;
        buffer = (*cinfo.mem->alloc_sarray)((j_common_ptr) &cinfo, JPOOL_IMAGE, row_stride, 1);
 
        width = cinfo.output_width;
        height = cinfo.output_height;
 
        if (cinfo.output_components != 3) {
            helios_runtime_error("ERROR (Context::readJPEG): Image file does not have RGB components.");
        } else if (width == 0 || height == 0) {
            helios_runtime_error("ERROR (Context::readJPEG): Image file is empty.");
        }
 
        pixel_data.resize(width * height);
 
        JSAMPLE *ba;
        int row = 0;
        while (cinfo.output_scanline < cinfo.output_height) {
            (void) jpeg_read_scanlines(&cinfo, buffer, 1);
 
            ba = buffer[0];
 
            for (int col = 0; col < row_stride; col += 3) {
                pixel_data.at(row * width + col / 3) = make_RGBcolor(ba[col] / 255.f, ba[col + 1] / 255.f, ba[col + 2] / 255.f);
            }
 
            row++;
        }
 
        (void) jpeg_finish_decompress(&cinfo);
 
        jpeg_destroy_decompress(&cinfo);
    } catch (...) {
        jpeg_destroy_decompress(&cinfo);
        throw;
    }
}
 
helios::int2 helios::getImageResolutionJPEG(const std::string &filename) {
    auto file_extension = getFileExtension(filename);
    if (file_extension != ".jpg" && file_extension != ".JPG" && file_extension != ".jpeg" && file_extension != ".JPEG") {
        helios_runtime_error("ERROR (Context::getImageResolutionJPEG): File " + filename + " is not JPEG format.");
    }
 
    jpeg_decompress_struct cinfo{};
 
    jpeg_error_mgr jerr{};
    std::unique_ptr<FILE, int (*)(FILE *)> infile(fopen(filename.c_str(), "rb"), fclose);
    if (!infile) {
        helios_runtime_error("ERROR (Context::getImageResolutionJPEG): File " + filename + " could not be opened. Check that the file exists and that you have permission to read it.");
    }
 
    cinfo.err = jpeg_std_error(&jerr);
    jerr.error_exit = jpg_error_exit;
 
    try {
        jpeg_create_decompress(&cinfo);
        jpeg_stdio_src(&cinfo, infile.get());
        (void) jpeg_read_header(&cinfo, (boolean) 1);
        (void) jpeg_start_decompress(&cinfo);
 
        jpeg_destroy_decompress(&cinfo);
    } catch (...) {
        jpeg_destroy_decompress(&cinfo);
        throw;
    }
 
    return make_int2(cinfo.output_width, cinfo.output_height);
}
 
void helios::writeJPEG(const std::string &a_filename, uint width, uint height, const std::vector<helios::RGBcolor> &pixel_data) {
 
    std::string filename = a_filename;
    auto file_extension = getFileExtension(filename);
    if (file_extension != ".jpg" && file_extension != ".JPG" && file_extension != ".jpeg" && file_extension != ".JPEG") {
        filename.append(".jpeg");
    }
 
    if (pixel_data.size() != width * height) {
        helios_runtime_error("ERROR (Context::writeJPEG): Pixel data does not have size of width*height.");
    }
 
    const uint bsize = 3 * width * height;
    std::vector<unsigned char> screen_shot_trans(bsize);
 
    size_t ii = 0;
    for (size_t i = 0; i < width * height; i++) {
        screen_shot_trans.at(ii) = (unsigned char) round(clamp(pixel_data.at(i).r, 0.f, 1.f) * 255);
        screen_shot_trans.at(ii + 1) = (unsigned char) round(clamp(pixel_data.at(i).g, 0.f, 1.f) * 255);
        screen_shot_trans.at(ii + 2) = (unsigned char) round(clamp(pixel_data.at(i).b, 0.f, 1.f) * 255);
        ii += 3;
    }
 
    struct jpeg_compress_struct cinfo{};
 
    struct jpeg_error_mgr jerr{};
 
    cinfo.err = jpeg_std_error(&jerr);
    jerr.error_exit = jpg_error_exit;
 
    JSAMPROW row_pointer;
    int row_stride;
 
    std::unique_ptr<FILE, int (*)(FILE *)> outfile(fopen(filename.c_str(), "wb"), fclose);
    if (!outfile) {
        helios_runtime_error("ERROR (Context::writeJPEG): File " + filename + " could not be opened. Check that the file path is correct you have permission to write to it.");
    }
 
    jpeg_create_compress(&cinfo);
    jpeg_stdio_dest(&cinfo, outfile.get());
 
    cinfo.image_width = width; /* image width and height, in pixels */
    cinfo.image_height = height;
    cinfo.input_components = 3; /* # of color components per pixel */
    cinfo.in_color_space = JCS_RGB; /* colorspace of input image */
 
    jpeg_set_defaults(&cinfo);
 
    jpeg_set_quality(&cinfo, 100, (boolean) 1 /* limit to baseline-JPEG values */);
 
    jpeg_start_compress(&cinfo, (boolean) 1);
 
    try {
        row_stride = width * 3; /* JSAMPLEs per row in image_buffer */
 
        while (cinfo.next_scanline < cinfo.image_height) {
            row_pointer = (JSAMPROW) &screen_shot_trans[(cinfo.image_height - cinfo.next_scanline - 1) * row_stride];
            (void) jpeg_write_scanlines(&cinfo, &row_pointer, 1);
        }
 
        jpeg_finish_compress(&cinfo);
        jpeg_destroy_compress(&cinfo);
    } catch (...) {
        jpeg_destroy_compress(&cinfo);
        throw;
    }
}
 
void helios::writeJPEG(const std::string &a_filename, uint width, uint height, const std::vector<unsigned char> &pixel_data) {
 
    // Convert pixel_data array into RGBcolor vector
 
    size_t pixels = width * height;
 
    std::vector<RGBcolor> rgb_data;
    rgb_data.resize(pixels);
 
    size_t channels = pixel_data.size() / pixels;
 
    if (channels < 3) {
        helios_runtime_error("ERROR (writeJPEG): Pixel data must have at least 3 color channels");
    }
 
    // Convert pixel data into RGB values
    for (size_t i = 0; i < pixels; i++) {
        rgb_data[i].r = scast<float>(pixel_data[i]) / 255.0f;
        rgb_data[i].g = scast<float>(pixel_data[i + pixels]) / 255.0f;
        rgb_data[i].b = scast<float>(pixel_data[i + 2 * pixels]) / 255.0f;
    }
 
    // Call RGB version of writeJPEG
    writeJPEG(a_filename, width, height, rgb_data);
}
 
void helios::writeEXR(const std::string &filename, uint width, uint height, const std::vector<float> &pixel_data, const std::string &channel_name) {
 
    if (pixel_data.size() != width * height) {
        helios_runtime_error("ERROR (writeEXR): pixel_data size (" + std::to_string(pixel_data.size()) + ") does not match width*height (" + std::to_string(width * height) + ").");
    }
 
    EXRHeader header;
    InitEXRHeader(&header);
 
    EXRImage image;
    InitEXRImage(&image);
 
    image.num_channels = 1;
    image.width = scast<int>(width);
    image.height = scast<int>(height);
 
    float *image_ptr[1];
    image_ptr[0] = const_cast<float *>(pixel_data.data());
 
    image.images = reinterpret_cast<unsigned char **>(image_ptr);
 
    header.num_channels = 1;
    header.channels = scast<EXRChannelInfo *>(malloc(sizeof(EXRChannelInfo)));
    strncpy(header.channels[0].name, channel_name.c_str(), 255);
    header.channels[0].name[255] = '\0';
 
    header.pixel_types = scast<int *>(malloc(sizeof(int)));
    header.requested_pixel_types = scast<int *>(malloc(sizeof(int)));
    header.pixel_types[0] = TINYEXR_PIXELTYPE_FLOAT;
    header.requested_pixel_types[0] = TINYEXR_PIXELTYPE_FLOAT;
 
    header.compression_type = TINYEXR_COMPRESSIONTYPE_ZIP;
 
    const char *err = nullptr;
    int ret = SaveEXRImageToFile(&image, &header, filename.c_str(), &err);
 
    free(header.channels);
    free(header.pixel_types);
    free(header.requested_pixel_types);
 
    if (ret != TINYEXR_SUCCESS) {
        std::string error_msg = "ERROR (writeEXR): Failed to write EXR file '" + filename + "'";
        if (err) {
            error_msg += ": " + std::string(err);
            FreeEXRErrorMessage(err);
        }
        helios_runtime_error(error_msg);
    }
}
 
void helios::writeEXR(const std::string &filename, uint width, uint height, const std::vector<std::vector<float>> &channel_data, const std::vector<std::string> &channel_names) {
 
    if (channel_data.size() != channel_names.size()) {
        helios_runtime_error("ERROR (writeEXR): channel_data size (" + std::to_string(channel_data.size()) + ") does not match channel_names size (" + std::to_string(channel_names.size()) + ").");
    }
    if (channel_data.empty()) {
        helios_runtime_error("ERROR (writeEXR): channel_data is empty.");
    }
    for (size_t c = 0; c < channel_data.size(); c++) {
        if (channel_data[c].size() != width * height) {
            helios_runtime_error("ERROR (writeEXR): channel_data[" + std::to_string(c) + "] size (" + std::to_string(channel_data[c].size()) + ") does not match width*height (" + std::to_string(width * height) + ").");
        }
    }
 
    int num_channels = scast<int>(channel_data.size());
 
    // Map band names to standard EXR channel names (R, G, B, A) for broad compatibility.
    // Names that don't map to a standard channel are kept as-is.
    auto mapChannelName = [](const std::string &name) -> std::string {
        std::string lower = name;
        std::transform(lower.begin(), lower.end(), lower.begin(), ::tolower);
        if (lower == "r" || lower == "red") return "R";
        if (lower == "g" || lower == "green") return "G";
        if (lower == "b" || lower == "blue") return "B";
        if (lower == "a" || lower == "alpha") return "A";
        return name;
    };
 
    std::vector<std::string> exr_channel_names(num_channels);
    for (int c = 0; c < num_channels; c++) {
        exr_channel_names[c] = mapChannelName(channel_names[c]);
    }
 
    // Sort channels alphabetically (EXR convention)
    std::vector<size_t> sort_indices(num_channels);
    for (size_t i = 0; i < sort_indices.size(); i++) {
        sort_indices[i] = i;
    }
    std::sort(sort_indices.begin(), sort_indices.end(), [&](size_t a, size_t b) {
        return exr_channel_names[a] < exr_channel_names[b];
    });
 
    EXRHeader header;
    InitEXRHeader(&header);
 
    EXRImage image;
    InitEXRImage(&image);
 
    image.num_channels = num_channels;
    image.width = scast<int>(width);
    image.height = scast<int>(height);
 
    std::vector<float *> image_ptrs(num_channels);
    for (int c = 0; c < num_channels; c++) {
        image_ptrs[c] = const_cast<float *>(channel_data[sort_indices[c]].data());
    }
    image.images = reinterpret_cast<unsigned char **>(image_ptrs.data());
 
    header.num_channels = num_channels;
    header.channels = scast<EXRChannelInfo *>(malloc(sizeof(EXRChannelInfo) * num_channels));
    header.pixel_types = scast<int *>(malloc(sizeof(int) * num_channels));
    header.requested_pixel_types = scast<int *>(malloc(sizeof(int) * num_channels));
 
    for (int c = 0; c < num_channels; c++) {
        strncpy(header.channels[c].name, exr_channel_names[sort_indices[c]].c_str(), 255);
        header.channels[c].name[255] = '\0';
        header.pixel_types[c] = TINYEXR_PIXELTYPE_FLOAT;
        header.requested_pixel_types[c] = TINYEXR_PIXELTYPE_FLOAT;
    }
 
    header.compression_type = TINYEXR_COMPRESSIONTYPE_ZIP;
 
    const char *err = nullptr;
    int ret = SaveEXRImageToFile(&image, &header, filename.c_str(), &err);
 
    free(header.channels);
    free(header.pixel_types);
    free(header.requested_pixel_types);
 
    if (ret != TINYEXR_SUCCESS) {
        std::string error_msg = "ERROR (writeEXR): Failed to write EXR file '" + filename + "'";
        if (err) {
            error_msg += ": " + std::string(err);
            FreeEXRErrorMessage(err);
        }
        helios_runtime_error(error_msg);
    }
}
 
helios::vec3 helios::spline_interp3(float u, const vec3 &x_start, const vec3 &tan_start, const vec3 &x_end, const vec3 &tan_end) {
    // Perform interpolation between two 3D points using Cubic Hermite Spline
 
    if (u < 0 || u > 1.f) {
        std::cerr << "WARNING (spline_interp3): Clamping query point 'u' to the interval (0,1)" << std::endl;
        u = clamp(u, 0.f, 1.f);
    }
 
    // Basis matrix
    float B[16] = {2.f, -2.f, 1.f, 1.f, -3.f, 3.f, -2.f, -1.f, 0, 0, 1.f, 0, 1.f, 0, 0, 0};
 
    // Control matrix
    const float C[12] = {x_start.x, x_start.y, x_start.z, x_end.x, x_end.y, x_end.z, tan_start.x, tan_start.y, tan_start.z, tan_end.x, tan_end.y, tan_end.z};
 
    // Parameter vector
    const float P[4] = {u * u * u, u * u, u, 1.f};
 
    float R[12] = {0.f};
 
    for (int i = 0; i < 4; i++) {
        for (int j = 0; j < 3; j++) {
            for (int k = 0; k < 4; k++) {
                R[3 * i + j] = R[3 * i + j] + B[4 * i + k] * C[3 * k + j];
            }
        }
    }
 
    float xq[3] = {0.f};
 
    for (int j = 0; j < 3; j++) {
        for (int k = 0; k < 4; k++) {
            xq[j] = xq[j] + P[k] * R[3 * k + j];
        }
    }
 
    return make_vec3(xq[0], xq[1], xq[2]);
}
 
float helios::XMLloadfloat(const pugi::xml_node node, const char *field) {
    const char *field_str = node.child_value(field);
 
    float value;
    if (strlen(field_str) == 0) {
        value = 99999;
    } else {
        if (!parse_float(field_str, value)) {
            value = 99999;
        }
    }
 
    return value;
}
 
int helios::XMLloadint(const pugi::xml_node node, const char *field) {
    const char *field_str = node.child_value(field);
 
    int value;
    if (strlen(field_str) == 0) {
        value = 99999;
    } else {
        if (!parse_int(field_str, value)) {
            value = 99999;
        }
    }
 
    return value;
}
 
std::string helios::XMLloadstring(const pugi::xml_node node, const char *field) {
    const std::string field_str = deblank(node.child_value(field));
 
    std::string value;
    if (field_str.empty()) {
        value = "99999";
    } else {
        value = field_str; // note: pugi loads xml data as a character.  need to separate it into int
    }
 
    return value;
}
 
helios::vec2 helios::XMLloadvec2(const pugi::xml_node node, const char *field) {
    const char *field_str = node.child_value(field);
 
    helios::vec2 value;
    if (strlen(field_str) == 0) {
        value = make_vec2(99999, 99999);
    } else {
        value = string2vec2(field_str); // note: pugi loads xml data as a character.  need to separate it into 2 floats
    }
 
    return value;
}
 
helios::vec3 helios::XMLloadvec3(const pugi::xml_node node, const char *field) {
    const char *field_str = node.child_value(field);
 
    helios::vec3 value;
    if (strlen(field_str) == 0) {
        value = make_vec3(99999, 99999, 99999);
    } else {
        value = string2vec3(field_str); // note: pugi loads xml data as a character.  need to separate it into 3 floats
    }
 
    return value;
}
 
helios::vec4 helios::XMLloadvec4(const pugi::xml_node node, const char *field) {
    const char *field_str = node.child_value(field);
 
    helios::vec4 value;
    if (strlen(field_str) == 0) {
        value = make_vec4(99999, 99999, 99999, 99999);
    } else {
        value = string2vec4(field_str); // note: pugi loads xml data as a character.  need to separate it into 4 floats
    }
 
    return value;
}
 
helios::int2 helios::XMLloadint2(const pugi::xml_node node, const char *field) {
    const char *field_str = node.child_value(field);
 
    helios::int2 value;
    if (strlen(field_str) == 0) {
        value = make_int2(99999, 99999);
    } else {
        value = string2int2(field_str); // note: pugi loads xml data as a character.  need to separate it into 2 ints
    }
 
    return value;
}
 
helios::int3 helios::XMLloadint3(const pugi::xml_node node, const char *field) {
    const char *field_str = node.child_value(field);
 
    helios::int3 value;
    if (strlen(field_str) == 0) {
        value = make_int3(99999, 99999, 99999);
    } else {
        value = string2int3(field_str); // note: pugi loads xml data as a character.  need to separate it into 3 ints
    }
 
    return value;
}
 
helios::int4 helios::XMLloadint4(const pugi::xml_node node, const char *field) {
    const char *field_str = node.child_value(field);
 
    helios::int4 value;
    if (strlen(field_str) == 0) {
        value = make_int4(99999, 99999, 99999, 99999);
    } else {
        value = string2int4(field_str); // note: pugi loads xml data as a character.  need to separate it into 4 ints
    }
 
    return value;
}
 
helios::RGBcolor helios::XMLloadrgb(const pugi::xml_node node, const char *field) {
    const char *field_str = node.child_value(field);
 
    helios::RGBAcolor value;
    if (strlen(field_str) == 0) {
        value = make_RGBAcolor(1, 1, 1, 0);
    } else {
        value = string2RGBcolor(field_str); // note: pugi loads xml data as a character.  need to separate it into 3 floats
    }
 
    return make_RGBcolor(value.r, value.g, value.b);
}
 
helios::RGBAcolor helios::XMLloadrgba(const pugi::xml_node node, const char *field) {
    const char *field_str = node.child_value(field);
 
    helios::RGBAcolor value;
    if (strlen(field_str) == 0) {
        value = make_RGBAcolor(1, 1, 1, 1);
    } else {
        value = string2RGBcolor(field_str); // note: pugi loads xml data as a character.  need to separate it into 3 floats
    }
 
    return value;
}
 
float helios::fzero(float (*f)(float, std::vector<float> &, const void *), std::vector<float> &vars, const void *params, float init_guess, float err_tol, int max_iter, WarningAggregator *warnings) {
    constexpr float DELTA_SEED = 1e-3f; // Increased for better initial slope estimate
    constexpr float DENOM_EPS = 1e-10f; // Relaxed flat function detection
    constexpr float MAX_STEP_FACTOR = 0.5f; // Limit step size for stability
 
    /* ---- initial pair ---------------------------------------------- */
    float x0 = init_guess;
    float x1 = (std::fabs(init_guess) > 1.0f) ? init_guess * (1.0f + DELTA_SEED) : init_guess + DELTA_SEED;
 
    float f0 = f(x0, vars, params);
    float f1 = f(x1, vars, params);
 
    // If initial points have opposite signs, use bisection for robustness
    bool use_bisection = (f0 * f1 < 0);
    float bracket_low = use_bisection ? std::min(x0, x1) : 0;
    float bracket_high = use_bisection ? std::max(x0, x1) : 0;
 
    for (int iter = 0; iter < max_iter; ++iter) {
 
        float denom = f1 - f0;
 
        /* ------- flat or nearly flat function ----------------------- */
        if (std::fabs(denom) < DENOM_EPS) {
            if (std::fabs(f1) < err_tol) { // already "close enough"
                return x1;
            }
            // Try a different approach if function is flat
            if (use_bisection) {
                float x2 = 0.5f * (bracket_low + bracket_high);
                if (std::fabs(x2 - x1) < err_tol * std::fabs(x2)) {
                    return x2;
                }
                float f2 = f(x2, vars, params);
                if (f1 * f2 < 0) {
                    bracket_high = x1;
                } else {
                    bracket_low = x1;
                }
                x0 = x1;
                f0 = f1;
                x1 = x2;
                f1 = f2;
                continue;
            }
            if (warnings) {
                warnings->addWarning("fzero_stagnation", "fzero stagnated (|f'|≈0).");
            }
            return x1; // graceful exit, finite value
        }
 
        /* ------- secant update with step limiting -------------------- */
        float x2 = x1 - f1 * (x1 - x0) / denom;
 
        // Limit step size for stability
        float step = x2 - x1;
        float max_step = MAX_STEP_FACTOR * std::max(std::fabs(x1), 1.0f);
        if (std::fabs(step) > max_step) {
            step = (step > 0) ? max_step : -max_step;
            x2 = x1 + step;
        }
 
        if (!std::isfinite(x2)) { // overflow / NaN safeguard
            if (warnings) {
                warnings->addWarning("fzero_nonfinite", "fzero produced non-finite iterate.");
            }
            return x1;
        }
 
        float f2 = f(x2, vars, params);
 
        // Update brackets if using bisection fallback
        if (use_bisection) {
            if (f1 * f2 < 0) {
                bracket_high = x1;
            } else {
                bracket_low = x1;
            }
        }
 
        /* ------- convergence criteria -------------------------------- */
        float rel_step = std::fabs(x2 - x1) / (std::fabs(x2) + 1.0f);
        if (std::fabs(f2) < err_tol && rel_step < err_tol) {
            return x2;
        }
 
        /* ------- next iteration -------------------------------------- */
        x0 = x1;
        f0 = f1;
        x1 = x2;
        f1 = f2;
    }
 
    if (warnings) {
        warnings->addWarning("fzero_convergence_failure", "fzero did not converge after " + std::to_string(max_iter) + " iterations.");
    }
    return x1; // best finite estimate
}
 
float helios::fzero(float (*f)(float, std::vector<float> &, const void *), std::vector<float> &vars, const void *params, float init_guess, bool &converged, float err_tol, int max_iter) {
    constexpr float DELTA_SEED = 1e-3f; // Increased for better initial slope estimate
    constexpr float DENOM_EPS = 1e-10f; // Relaxed flat function detection
    constexpr float MAX_STEP_FACTOR = 0.5f; // Limit step size for stability
 
    converged = false; // Initialize as not converged
 
    /* ---- initial pair ---------------------------------------------- */
    float x0 = init_guess;
    float x1 = (std::fabs(init_guess) > 1.0f) ? init_guess * (1.0f + DELTA_SEED) : init_guess + DELTA_SEED;
 
    float f0 = f(x0, vars, params);
    float f1 = f(x1, vars, params);
 
    // If initial points have opposite signs, use bisection for robustness
    bool use_bisection = (f0 * f1 < 0);
    float bracket_low = use_bisection ? std::min(x0, x1) : 0;
    float bracket_high = use_bisection ? std::max(x0, x1) : 0;
 
    for (int iter = 0; iter < max_iter; ++iter) {
 
        float denom = f1 - f0;
 
        /* ------- flat or nearly flat function ----------------------- */
        if (std::fabs(denom) < DENOM_EPS) {
            if (std::fabs(f1) < err_tol) { // already "close enough"
                converged = true;
                return x1;
            }
            // Try a different approach if function is flat
            if (use_bisection) {
                float x2 = 0.5f * (bracket_low + bracket_high);
                if (std::fabs(x2 - x1) < err_tol * std::fabs(x2)) {
                    converged = true;
                    return x2;
                }
                float f2 = f(x2, vars, params);
                if (f1 * f2 < 0) {
                    bracket_high = x1;
                } else {
                    bracket_low = x1;
                }
                x0 = x1;
                f0 = f1;
                x1 = x2;
                f1 = f2;
                continue;
            }
            // Function is stagnated, not converged
            return x1; // graceful exit, finite value
        }
 
        /* ------- secant update with step limiting -------------------- */
        float x2 = x1 - f1 * (x1 - x0) / denom;
 
        // Limit step size for stability
        float step = x2 - x1;
        float max_step = MAX_STEP_FACTOR * std::max(std::fabs(x1), 1.0f);
        if (std::fabs(step) > max_step) {
            step = (step > 0) ? max_step : -max_step;
            x2 = x1 + step;
        }
 
        if (!std::isfinite(x2)) { // overflow / NaN safeguard
            return x1;
        }
 
        float f2 = f(x2, vars, params);
 
        // Update brackets if using bisection fallback
        if (use_bisection) {
            if (f1 * f2 < 0) {
                bracket_high = x1;
            } else {
                bracket_low = x1;
            }
        }
 
        /* ------- convergence criteria -------------------------------- */
        float rel_step = std::fabs(x2 - x1) / (std::fabs(x2) + 1.0f);
        if (std::fabs(f2) < err_tol && rel_step < err_tol) {
            converged = true;
            return x2;
        }
 
        /* ------- next iteration -------------------------------------- */
        x0 = x1;
        f0 = f1;
        x1 = x2;
        f1 = f2;
    }
 
    // Did not converge after max_iter iterations
    return x1; // best finite estimate
}
 
float helios::interp1(const std::vector<helios::vec2> &points, float x) {
    // Handle empty input
    if (points.empty()) {
        helios_runtime_error("ERROR (interp1): Cannot interpolate with empty points vector.");
    }
 
    // Handle single point case
    if (points.size() == 1) {
        return points[0].y;
    }
 
    // Fast path: check first if data is increasing (most common case)
    // This avoids full validation for performance-critical applications
    constexpr float EPSILON = 1.0E-5f;
    bool is_likely_increasing = points.size() < 2 || points[1].x > points[0].x;
 
    if (is_likely_increasing) {
        // Quick verification for increasing sequence
        bool is_valid_increasing = true;
        for (size_t i = 1; i < points.size() && is_valid_increasing; ++i) {
            float deltaX = points[i].x - points[i - 1].x;
            if (deltaX <= EPSILON) {
                is_valid_increasing = false;
            }
        }
 
        if (is_valid_increasing) {
            // Handle extrapolation cases
            if (x <= points.front().x) {
                return points.front().y;
            }
            if (x >= points.back().x) {
                return points.back().y;
            }
 
            // Optimized binary search for increasing sequence
            auto it = std::lower_bound(points.begin(), points.end(), x, [](const vec2 &point, float value) { return point.x < value; });
 
            size_t upper_idx = std::distance(points.begin(), it);
            size_t lower_idx = upper_idx - 1;
 
            const vec2 &p1 = points[lower_idx];
            const vec2 &p2 = points[upper_idx];
 
            // Linear interpolation
            float t = (x - p1.x) / (p2.x - p1.x);
            return p1.y + t * (p2.y - p1.y);
        }
    }
 
    // Fallback: full validation for decreasing or invalid sequences
    bool is_increasing = true;
    bool is_decreasing = true;
 
    for (size_t i = 1; i < points.size(); ++i) {
        float deltaX = points[i].x - points[i - 1].x;
 
        if (std::abs(deltaX) < EPSILON) {
            helios_runtime_error("ERROR (interp1): Adjacent X points cannot be equal.");
        }
 
        if (deltaX > 0) {
            is_decreasing = false;
        } else {
            is_increasing = false;
        }
    }
 
    if (!is_increasing && !is_decreasing) {
        helios_runtime_error("ERROR (interp1): X points must be monotonic (either all increasing or all decreasing).");
    }
 
    // Handle extrapolation cases
    if (is_decreasing) {
        if (x >= points.front().x) {
            return points.front().y;
        }
        if (x <= points.back().x) {
            return points.back().y;
        }
 
        // Optimized binary search for decreasing sequence
        auto it = std::lower_bound(points.begin(), points.end(), x, [](const vec2 &point, float value) { return point.x > value; });
 
        size_t upper_idx = std::distance(points.begin(), it);
        if (upper_idx == 0)
            upper_idx = 1;
        size_t lower_idx = upper_idx - 1;
 
        const vec2 &p1 = points[lower_idx];
        const vec2 &p2 = points[upper_idx];
 
        // Linear interpolation
        float t = (x - p1.x) / (p2.x - p1.x);
        return p1.y + t * (p2.y - p1.y);
    }
 
    // This should never be reached due to earlier validation
    helios_runtime_error("ERROR (interp1): Unexpected interpolation state.");
    return 0.0f; // Suppress compiler warning (never reached)
}
 
std::string helios::getFileExtension(const std::string &filepath) {
    std::filesystem::path output_path_fs = filepath;
    return output_path_fs.extension().string();
}
 
std::string helios::getFileStem(const std::string &filepath) {
    std::filesystem::path output_path_fs = filepath;
    return output_path_fs.stem().string();
}
 
std::string helios::getFileName(const std::string &filepath) {
    std::filesystem::path output_path_fs = filepath;
    return output_path_fs.filename().string();
}
 
std::string helios::getFilePath(const std::string &filepath, bool trailingslash) {
    std::filesystem::path output_path_fs = filepath;
    std::filesystem::path output_path = output_path_fs.parent_path();
    std::string out_str = output_path.make_preferred().string();
    if (trailingslash && !out_str.empty()) {
        char last = out_str.back();
        if (last != '/' && last != '\\') {
            out_str += std::filesystem::path::preferred_separator;
        }
    }
    return out_str;
}
 
bool helios::validateOutputPath(std::string &output_path, const std::vector<std::string> &allowable_file_extensions) {
    if (output_path.empty()) { // path was empty
        return false;
    }
 
    std::filesystem::path output_path_fs = output_path;
 
    std::string output_file = output_path_fs.filename().string();
    std::string output_file_ext = output_path_fs.extension().string();
    std::string output_dir = output_path_fs.parent_path().string();
 
    if (output_file.empty()) { // path was a directory without a file
 
        // Make sure directory has a trailing slash
        if (output_dir.find_last_of('/') != output_dir.length() - 1) {
            output_path += "/";
        }
    } else if (isDirectoryPath(output_path)) {
        // Path is a directory (either exists as one or is clearly intended to be one)
        // Ensure it has a trailing slash so file concatenation works correctly
        if (output_path.back() != '/' && output_path.back() != '\\') {
            output_path += "/";
        }
    }
 
    // Create the output directory if it does not exist
    if (!output_dir.empty() && !std::filesystem::exists(output_dir)) {
        if (!std::filesystem::create_directory(output_dir)) {
            return false;
        }
    }
 
    if (!output_file.empty() && !allowable_file_extensions.empty()) {
        // validate file extension
        bool valid_extension = false;
        for (const auto &ext: allowable_file_extensions) {
            if (output_file_ext == ext) {
                valid_extension = true;
                break;
            }
        }
        if (!valid_extension) {
            return false;
        }
    }
 
    return true;
}
 
bool helios::isDirectoryPath(const std::string &path) {
    if (path.empty()) {
        return false;
    }
 
    // Check if path exists and is a directory
    if (std::filesystem::exists(path) && std::filesystem::is_directory(path)) {
        return true;
    }
 
    // If path doesn't exist, use heuristics to determine if it's intended to be a directory
 
    // 1. Check for trailing slash (most reliable indicator)
    if (path.back() == '/' || path.back() == '\\') {
        return true;
    }
 
    // 2. Check if the last component has a file extension
    std::filesystem::path path_obj(path);
    std::string extension = path_obj.extension().string();
 
    // If there's no extension, it's likely a directory
    // (This handles cases like "./annotations" vs "./file.txt")
    if (extension.empty()) {
        std::string filename = path_obj.filename().string();
 
        // Handle special cases: dotfiles are usually files, not directories
        if (filename.front() == '.' && filename != "." && filename != "..") {
            return false; // .bashrc, .gitignore, .hidden files, etc.
        }
 
        // For other cases without extension, assume it's a directory
        // This fixes the bug where "./annotations" was treated as a file
        return true;
    }
 
    // 3. If it has an extension, it's likely a file
    return false;
}
 
//--------------------- HELIOS_BUILD PATH RESOLUTION -----------------------------------//
 
std::string getBuildDirectory() {
    // Try HELIOS_BUILD environment variable (required)
    if (const char *buildDir = std::getenv("HELIOS_BUILD")) {
        return std::string(buildDir);
    }
 
    // Fallback: assume current working directory contains the build
    // This is a simple fallback that should work for most use cases
    std::filesystem::path currentPath = std::filesystem::current_path();
 
    // If we're already in a build directory, use it
    if (std::filesystem::exists(currentPath / "plugins")) {
        return currentPath.string();
    }
 
    // If we're in a subdirectory, try going up to find build directory
    std::filesystem::path parent = currentPath.parent_path();
    if (std::filesystem::exists(parent / "plugins")) {
        return parent.string();
    }
 
    // Last resort: use current directory
    return currentPath.string();
}
 
std::filesystem::path helios::resolveAssetPath(const std::string &relativePath) {
    // This function is deprecated but kept for compatibility
    // It now just calls resolveFilePath
    return resolveFilePath(relativePath);
}
 
std::filesystem::path helios::tryResolvePluginAsset(const std::string &pluginName, const std::string &assetPath) {
    std::string pluginAssetPath = "plugins/" + pluginName + "/" + assetPath;
    return tryResolveFilePath(pluginAssetPath);
}
 
std::filesystem::path helios::resolvePluginAsset(const std::string &pluginName, const std::string &assetPath) {
    std::string pluginAssetPath = "plugins/" + pluginName + "/" + assetPath;
    return resolveFilePath(pluginAssetPath);
}
 
 
std::filesystem::path helios::tryResolveFilePath(const std::string &filename) {
    // Non-throwing version for probing file existence
    if (filename.empty()) {
        return {};
    }
 
    // 1. If absolute path, validate and return
    std::filesystem::path filepath(filename);
    if (filepath.is_absolute()) {
        if (std::filesystem::exists(filepath)) {
            return std::filesystem::canonical(filepath);
        } else {
            return {};
        }
    }
 
    // 2. First try: Check relative to current working directory
    std::filesystem::path currentDirPath = std::filesystem::current_path() / filename;
    if (std::filesystem::exists(currentDirPath)) {
        return std::filesystem::canonical(currentDirPath);
    }
 
    // 3. Second try: Resolve relative to build directory (fallback for HELIOS_BUILD)
    std::string buildDir = getBuildDirectory();
    std::filesystem::path buildDirPath = std::filesystem::path(buildDir) / filename;
 
    if (std::filesystem::exists(buildDirPath)) {
        return std::filesystem::canonical(buildDirPath);
    }
 
    // File not found in any location
    return {};
}
 
std::filesystem::path helios::resolveFilePath(const std::string &filename) {
    // Handle empty string case - return current working directory
    if (filename.empty()) {
        return std::filesystem::current_path();
    }
 
    // Try to resolve using the non-throwing version first
    std::filesystem::path result = tryResolveFilePath(filename);
 
    if (!result.empty()) {
        return result;
    }
 
    // File not found - provide clear error message
    std::filesystem::path currentDirPath = std::filesystem::current_path() / filename;
    std::string buildDir = getBuildDirectory();
    std::filesystem::path buildDirPath = std::filesystem::path(buildDir) / filename;
 
    helios_runtime_error("ERROR (helios::resolveFilePath): Could not locate asset file: " + filename + " (checked: " + currentDirPath.string() + " and " + buildDirPath.string() + "). " +
                         "Ensure file exists relative to current directory or HELIOS_BUILD path.");
    return {}; // This line should never be reached due to helios_runtime_error throwing
}
 
std::filesystem::path helios::resolveSpectraPath(const std::string &spectraFile) {
    // All spectral data files should be looked for in the radiation plugin's spectral_data directory
    std::string spectraPath = "plugins/radiation/spectral_data/" + spectraFile;
    return resolveFilePath(spectraPath);
}
 
bool helios::validateAssetPath(const std::filesystem::path &assetPath) {
    return std::filesystem::exists(assetPath) && std::filesystem::is_regular_file(assetPath);
}
 
std::filesystem::path helios::findProjectRoot(const std::filesystem::path &startPath) {
    std::filesystem::path currentPath = std::filesystem::absolute(startPath);
 
    while (!currentPath.empty() && currentPath != currentPath.parent_path()) {
        std::filesystem::path cmakeFile = currentPath / "CMakeLists.txt";
        if (std::filesystem::exists(cmakeFile) && std::filesystem::is_regular_file(cmakeFile)) {
            return currentPath;
        }
        currentPath = currentPath.parent_path();
    }
 
    return {}; // Return empty path if not found
}
 
std::filesystem::path helios::resolveProjectFile(const std::string &relativePath) {
    // Handle empty path
    if (relativePath.empty()) {
        helios_runtime_error("ERROR (resolveProjectFile): Cannot resolve empty file path.");
    }
 
    // If it's already absolute, just validate and return it
    std::filesystem::path inputPath(relativePath);
    if (inputPath.is_absolute()) {
        if (validateAssetPath(inputPath)) {
            return inputPath;
        } else {
            helios_runtime_error("ERROR (resolveProjectFile): Absolute path '" + relativePath + "' does not exist or is not a regular file.");
        }
    }
 
    // Strategy 1: Check current working directory
    std::filesystem::path cwdPath = std::filesystem::current_path() / relativePath;
    if (validateAssetPath(cwdPath)) {
        return std::filesystem::absolute(cwdPath);
    }
 
    // Strategy 2: Check project directory
    std::filesystem::path projectRoot = findProjectRoot();
    if (!projectRoot.empty()) {
        std::filesystem::path projectPath = projectRoot / relativePath;
        if (validateAssetPath(projectPath)) {
            return std::filesystem::absolute(projectPath);
        }
    }
 
    // Strategy 3: Error - file not found in either location
    std::string errorMsg = "ERROR (resolveProjectFile): Could not locate file '" + relativePath + "'. Searched in:\n";
    errorMsg += "  - Current working directory: " + std::filesystem::current_path().string() + "\n";
    if (!projectRoot.empty()) {
        errorMsg += "  - Project directory: " + projectRoot.string() + "\n";
    } else {
        errorMsg += "  - Project directory: (not found - no CMakeLists.txt found in parent directories)\n";
    }
    errorMsg += "Ensure the file exists in one of these locations.";
 
    helios_runtime_error(errorMsg);
    return {}; // Never reached due to exception
}
 
std::vector<float> helios::importVectorFromFile(const std::string &filepath) {
    std::ifstream stream(filepath.c_str());
 
    if (!stream.is_open()) {
        helios_runtime_error("ERROR (helios::importVectorFromFile): File " + filepath + " could not be opened for reading. Check that it exists and that you have permission to read it.");
    }
 
    std::istream_iterator<float> start(stream), end;
    std::vector<float> vec(start, end);
    return vec;
}
 
float helios::sample_Beta_distribution(float mu, float nu, std::minstd_rand0 *generator) {
    // 1) draw two independent Gamma variates:
    //    X ~ Gamma(α=ν, 1),  Y ~ Gamma(β=μ, 1)
    std::gamma_distribution<float> dist_nu(nu, 1.0);
    std::gamma_distribution<float> dist_mu(mu, 1.0);
 
    float X = dist_nu(*generator);
    float Y = dist_mu(*generator);
 
    // 2) form the Beta = X/(X+Y)
    float b = X / (X + Y);
 
    // 3) rescale to θ_L = (π/2)*b
    return 0.5f * PI_F * b;
}
 
// Complete elliptic integral of the first kind via the arithmetic–geometric mean (AGM)
float compute_elliptic_integral_first_kind(float e) {
    // K(e) = π / (2 * AGM(1, sqrt(1 - e^2)))
    float a = 1.0f;
    float b = std::sqrt(1.0f - e * e);
    for (int iter = 0; iter < 10; ++iter) {
        float an = 0.5f * (a + b);
        float bn = std::sqrt(a * b);
        a = an;
        b = bn;
    }
    return PI_F / (2.0f * a);
}
 
// Ellipsoidal PDF for leaf azimuth distribution
// phi: sample angle [0,2π), e: eccentricity, phi0: rotation offset, K_e: precomputed ellip. integral
float evaluate_ellipsoidal_azimuth_PDF(float phi, float e, float phi0, float K_e) {
    float d = phi - phi0;
    float c2 = (1.f - e * e) * std::cos(d) * std::cos(d) + std::sin(d) * std::sin(d);
    return 1.f / (4.f * K_e * std::sqrt(c2));
}
 
// Sample phi from ellipsoidal distribution via rejection sampling
float helios::sample_ellipsoidal_azimuth(float e, float phi0_degrees, std::minstd_rand0 *generator) {
    // sanity‐check
    if (e < 0.f || e > 1.f) {
        helios_runtime_error("ERROR (helios::sample_ellipsoidal_azimuth): Eccentricity must be in [0,1].");
    }
 
    // convert rotation offset to radians
    float phi0 = deg2rad(phi0_degrees);
 
    // ellipse semiaxes: a=1, b = sqrt(1 - e^2)
    float a = 1.f;
    float b = std::sqrt(1.f - e * e);
 
    // sample the ellipse parameter t uniformly in [0,2π)
    std::uniform_real_distribution<float> distT(0.f, 2.f * PI_F);
    float t = distT(*generator);
 
    // point on the ellipse boundary
    float x = a * std::cos(t);
    float y = b * std::sin(t);
 
    // compute its polar angle
    float phi = std::atan2(y, x) + phi0;
 
    // wrap into [0,2π)
    if (phi < 0.f)
        phi += 2.f * PI_F;
    else if (phi >= 2.f * PI_F)
        phi -= 2.f * PI_F;
 
    return phi;
}
 
std::vector<float> helios::linspace(float start, float end, int num) {
    if (num <= 0) {
        helios_runtime_error("ERROR (linspace): Number of points must be greater than 0.");
    }
 
    if (num == 1) {
        return {start};
    }
 
    std::vector<float> result(num);
    float step = (end - start) / (num - 1);
 
    for (int i = 0; i < num; ++i) {
        result[i] = start + i * step;
    }
 
    result[num - 1] = end;
 
    return result;
}
 
std::vector<vec2> helios::linspace(const vec2 &start, const vec2 &end, int num) {
    if (num <= 0) {
        helios_runtime_error("ERROR (linspace): Number of points must be greater than 0.");
    }
 
    if (num == 1) {
        return {start};
    }
 
    std::vector<vec2> result(num);
    vec2 step = (end - start) / float(num - 1);
 
    for (int i = 0; i < num; ++i) {
        result[i] = start + step * float(i);
    }
 
    result[num - 1] = end;
 
    return result;
}
 
std::vector<vec3> helios::linspace(const vec3 &start, const vec3 &end, int num) {
    if (num <= 0) {
        helios_runtime_error("ERROR (linspace): Number of points must be greater than 0.");
    }
 
    if (num == 1) {
        return {start};
    }
 
    std::vector<vec3> result(num);
    vec3 step = (end - start) / float(num - 1);
 
    for (int i = 0; i < num; ++i) {
        result[i] = start + step * float(i);
    }
 
    result[num - 1] = end;
 
    return result;
}
 
std::vector<vec4> helios::linspace(const vec4 &start, const vec4 &end, int num) {
    if (num <= 0) {
        helios_runtime_error("ERROR (linspace): Number of points must be greater than 0.");
    }
 
    if (num == 1) {
        return {start};
    }
 
    std::vector<vec4> result(num);
    vec4 step = (end - start) / float(num - 1);
 
    for (int i = 0; i < num; ++i) {
        result[i] = start + step * float(i);
    }
 
    result[num - 1] = end;
 
    return result;
}
 
// float helios::sample_ellipsoidal_azimuth(
//     float e,
//     float phi0_degrees,
//     std::minstd_rand0 *generator
// ) {
//     // 1) sanity‐check
//     if (e < 0.f || e > 1.f) {
//         helios_runtime_error(
//             "ERROR (helios::sample_ellipsoidal_azimuth): "
//             "eccentricity must be in [0,1]."
//         );
//     }
//
//     // 2) trivial uniform case
//     std::uniform_real_distribution<float> distPhi(0.f, 2.f * PI_F);
//     if (e == 0.f) {
//         return distPhi(*generator);
//     }
//
//     // 3) precompute rotation offset
//     float phi0 = deg2rad(phi0_degrees);
//
//     // 4) rejection sampling: envelope = uniform φ, accept with ratio = (1–e²)/denominator
//     std::uniform_real_distribution<float> dist01(0.f, 1.f);
//--------- WarningAggregator Implementation ---------//
 
void helios::WarningAggregator::addWarning(const std::string &category, const std::string &message) {
    if (!enabled_) {
        return;
    }
 
    std::lock_guard<std::mutex> lock(mutex_);
 
    // Increment total count (always)
    counts_[category]++;
 
    // Only store up to MAX_EXAMPLES messages to prevent memory issues
    auto &messages = warnings_[category];
    if (messages.size() < MAX_EXAMPLES) {
        messages.push_back(message);
    }
}
 
void helios::WarningAggregator::report(std::ostream &stream, bool compact) {
    std::lock_guard<std::mutex> lock(mutex_);
 
    if (counts_.empty()) {
        return; // Nothing to report
    }
 
    // Report each category
    for (const auto &entry: counts_) {
        const std::string &category = entry.first;
        size_t count = entry.second;
 
        stream << "WARNING: " << count << " instance" << (count > 1 ? "s" : "") << " of '" << category << "'";
 
        if (!compact) {
            // Original behavior: show examples
            const auto &messages = warnings_[category];
 
            // Show first few examples
            size_t examples_to_show = std::min(size_t(3), messages.size());
            stream << " (showing first " << examples_to_show << "):" << std::endl;
 
            for (size_t i = 0; i < examples_to_show; ++i) {
                stream << "  - " << messages[i] << std::endl;
            }
 
            if (count > MAX_EXAMPLES) {
                stream << "  (Note: More than " << MAX_EXAMPLES << " warnings of this type were encountered)" << std::endl;
            }
            stream << std::endl;
        } else {
            // Compact mode: just the count
            stream << std::endl;
        }
    }
 
    // Clear after reporting
    warnings_.clear();
    counts_.clear();
}
 
size_t helios::WarningAggregator::getCount(const std::string &category) const {
    std::lock_guard<std::mutex> lock(mutex_);
 
    auto it = counts_.find(category);
    if (it != counts_.end()) {
        return it->second;
    }
    return 0;
}
 
void helios::WarningAggregator::clear() {
    std::lock_guard<std::mutex> lock(mutex_);
    warnings_.clear();
    counts_.clear();
}
 
void helios::WarningAggregator::setEnabled(bool enabled) {
    enabled_ = enabled;
}
 
bool helios::WarningAggregator::isEnabled() const {
    return enabled_;
}
 
//     while (true) {
//         float phi = distPhi(*generator);
//         float d   = phi - phi0;
//         // wrap to [–π,π) for numerical stability
//         if      (d < -PI_F) d += 2.f*PI_F;
//         else if (d >=  PI_F) d -= 2.f*PI_F;
//
//         // denominator = (1–e²)·cos²d + sin²d
//         float c = std::cos(d), s = std::sin(d);
//         float denom = (1.f - e*e)*c*c + s*s;
//
//         // acceptance ratio ∈ (0,1]
//         float ratio = (1.f - e*e) / denom;
//
//         if (dist01(*generator) <= ratio) {
//             // wrap phi back into [0,2π)
//             if      (phi < 0.f)        phi += 2.f*PI_F;
//             else if (phi >= 2.f*PI_F)  phi -= 2.f*PI_F;
//             return phi;
//         }
//         // otherwise retry
//     }
// }