Public Member Functions
	Phytomer (const PhytomerParameters &params, Shoot parent_shoot, uint phytomer_index, const helios::vec3 &parent_internode_axis, const helios::vec3 &parent_petiole_axis, helios::vec3 internode_base_origin, const AxisRotation &shoot_base_rotation, float internode_radius, float internode_length_max, float internode_length_scale_factor_fraction, float leaf_scale_factor_fraction, uint rank, PlantArchitecture plantarchitecture_ptr, helios::Context *context_ptr)
	Constructor.

std::vector< helios::vec3 >	getInternodeNodePositions () const
	Retrieve the positions of nodes associated with an internode.

std::vector< float >	getInternodeNodeRadii () const
	Retrieve the radii of nodes associated with an internode.

float	calculatePhytomerVolume (uint node_number) const
	Calculates the volume of a phytomer.

helios::vec3	getInternodeAxisVector (float stem_fraction) const
	Retrieves the axis vector of the internode at a given fraction along the internode.

helios::vec3	getPetioleAxisVector (float stem_fraction, uint petiole_index) const
	Retrieves the petiole axis vector for a given stem fraction and petiole index.

helios::vec3	getPeduncleAxisVector (float stem_fraction, uint petiole_index, uint bud_index) const
	Retrieves the peduncle axis vector for a given stem fraction, petiole index, and floral bud index.

float	getInternodeLength () const
	Computes the total length of the internode.

float	getInternodeRadius () const
	Retrieves the radius of the internode.

float	getPetioleLength () const
	Retrieves the length of the petiole.

float	getInternodeRadius (float stem_fraction) const
	Retrieves the radius of the internode based on the stem fraction.

float	getLeafArea () const
	Calculates the total leaf area for the current phytomer.

helios::vec3	getLeafBasePosition (uint petiole_index, uint leaf_index) const
	Retrieves the position of the base of a leaf within the phytomer.

bool	hasLeaf () const
	Checks if the phytomer has a leaf.

float	calculateDownstreamLeafArea () const
	Calculates the total leaf area downstream of the current phytomer.

void	setInternodeLengthScaleFraction (float internode_scale_factor_fraction, bool update_context_geometry)
	Set the current internode length as a fraction of its maximum length.

void	scaleInternodeMaxLength (float scale_factor)
	Scale the fully-elongated (maximum) internode length as a fraction of its current fully-elongated length.

void	setInternodeMaxLength (float internode_length_max_new)
	Set the fully-elongated (maximum) internode length.

void	setInternodeMaxRadius (float internode_radius_max_new)
	Set the maximum radius of the internode.

void	setLeafScaleFraction (uint petiole_index, float leaf_scale_factor_fraction)
	Set the leaf scale as a fraction of its total fully-elongated scale factor. Value is uniformly applied for all leaves/leaflets in the petiole.

void	setLeafScaleFraction (float leaf_scale_factor_fraction)
	Set the leaf scale as a fraction of its total fully-elongated scale factor for all petioles in the phytomer. Value is uniformly applied for all leaves/leaflets in the phytomer.

void	setLeafPrototypeScale (uint petiole_index, float leaf_prototype_scale)
	Set the fully-elongated (maximum) leaf prototype scale. Value is uniformly applied for all leaves/leaflets in the petiole.

void	setLeafPrototypeScale (float leaf_prototype_scale)
	Set the fully-elongated (maximum) leaf prototype scale for all petioles in the phytomer. Value is uniformly applied for all leaves/leaflets in the petiole.

void	scaleLeafPrototypeScale (uint petiole_index, float scale_factor)
	Scales the leaf prototype by the given scale factor. Value is uniformly applied for all leaves/leaflets in the petiole.

void	scaleLeafPrototypeScale (float scale_factor)
	Scales the leaf prototype by the given scale factor for all petioles in the phytomer. Value is uniformly applied for all leaves/leaflets in the petiole.

void	scalePetioleGeometry (uint petiole_index, float target_length, float target_base_radius)
	Scale petiole geometry to match target length and radius.

void	setInflorescenceScaleFraction (FloralBud &fbud, float inflorescence_scale_factor_fraction) const
	Sets the scaling fraction for the inflorescence of a floral bud.

void	setPetioleBase (const helios::vec3 &base_position)
	Sets the base position of the petiole to the specified position.

void	rotateLeaf (uint petiole_index, uint leaf_index, const AxisRotation &rotation)
	Rotates a specified leaf around its base using the given rotation parameters.

void	setVegetativeBudState (BudState state)
	Sets the vegetative bud state for all axillary vegetative buds in the phytomer.

void	setVegetativeBudState (BudState state, uint petiole_index, uint bud_index)
	Sets the state of a vegetative bud at the specified petiole and bud indices.

void	setFloralBudState (BudState state)
	Sets the floral bud state for all non-terminal buds.

void	setFloralBudState (BudState state, uint petiole_index, uint bud_index)
	Sets the state of a specific floral bud.

void	setFloralBudState (BudState state, FloralBud &fbud)
	Sets the state of a floral bud.

void	removeLeaf ()
	Removes the leaf and its associated properties from the phytomer.

void	deletePhytomer ()
	Deletes the phytomer and its associated components.

Static Public Member Functions
static helios::vec3	getAxisVector (float stem_fraction, const std::vector< helios::vec3 > &axis_vertices)
	Computes the normalized vector direction along the axis at a given fraction of the stem.

static void	setVegetativeBudState (BudState state, VegetativeBud &vbud)
	Sets the vegetative bud's state to the specified state.

Data Fields
std::vector< std::vector< helios::vec3 > >	petiole_vertices
	Coordinates of internode tube segments. Index is tube segment within internode.

std::vector< std::vector< helios::vec3 > >	leaf_bases

std::vector< std::vector< std::vector< helios::vec3 > > >	peduncle_vertices

std::vector< std::vector< std::vector< float > > >	peduncle_radii

std::vector< std::vector< float > >	peduncle_length

std::vector< std::vector< float > >	peduncle_radius

std::vector< std::vector< float > >	peduncle_pitch

std::vector< std::vector< float > >	peduncle_curvature

float	internode_pitch

float	internode_phyllotactic_angle

std::vector< std::vector< float > >	petiole_radii

std::vector< float >	petiole_length

std::vector< float >	petiole_pitch

std::vector< float >	petiole_curvature

std::vector< float >	petiole_taper

std::vector< helios::vec3 >	petiole_axis_initial

std::vector< helios::vec3 >	petiole_rotation_axis

std::vector< std::vector< float > >	leaf_size_max

std::vector< std::vector< AxisRotation > >	leaf_rotation

std::vector< helios::RGBcolor >	internode_colors

std::vector< helios::RGBcolor >	petiole_colors

std::vector< std::vector< uint > >	petiole_objIDs

std::vector< std::vector< uint > >	leaf_objIDs

PhytomerParameters	phytomer_parameters

uint	rank

helios::int3	shoot_index
	.x = index of phytomer along shoot, .y = current number of phytomers on parent shoot, .z = maximum number of phytomers on parent shoot

uint	plantID

uint	parent_shoot_ID

Shoot *	parent_shoot_ptr

float	age = 0
	Time since the phytomer was created.

bool	isdormant = false

float	current_internode_scale_factor = 1

std::vector< float >	current_leaf_scale_factor

float	old_phytomer_volume = 0

float	downstream_leaf_area = 0

std::vector< std::vector< VegetativeBud > >	axillary_vegetative_buds

std::vector< std::vector< FloralBud > >	floral_buds

float	internode_radius_initial

float	internode_radius_max

float	internode_length_max

std::vector< float >	internode_curvature_perturbations
	Stochastic curvature perturbation values for each internode segment (for exact XML reconstruction)

std::vector< float >	internode_yaw_perturbations
	Stochastic yaw perturbation values for each internode segment (for exact XML reconstruction)

bool	build_context_geometry_petiole = true

bool	build_context_geometry_peduncle = true

Friends
struct	Shoot

class	PlantArchitecture

Detailed Description

Definition at line 1022 of file PlantArchitecture.h.

Constructor & Destructor Documentation

◆ Phytomer()

Phytomer::Phytomer	(	const PhytomerParameters &	params,
		Shoot *	parent_shoot,
		uint	phytomer_index,
		const helios::vec3 &	parent_internode_axis,
		const helios::vec3 &	parent_petiole_axis,
		helios::vec3	internode_base_origin,
		const AxisRotation &	shoot_base_rotation,
		float	internode_radius,
		float	internode_length_max,
		float	internode_length_scale_factor_fraction,
		float	leaf_scale_factor_fraction,
		uint	rank,
		PlantArchitecture *	plantarchitecture_ptr,
		helios::Context *	context_ptr
	)

Constructor.

Definition at line 1445 of file PlantArchitecture.cpp.

Member Function Documentation

◆ calculateDownstreamLeafArea()

float Phytomer::calculateDownstreamLeafArea ( ) const

Calculates the total leaf area downstream of the current phytomer.

Returns: The total downstream leaf area as a float.

Definition at line 3026 of file PlantArchitecture.cpp.

◆ calculatePhytomerVolume()

float Phytomer::calculatePhytomerVolume ( uint node_number ) const

Calculates the volume of a phytomer.

Parameters

[in] node_number The node index of the phytomer whose volume is to be computed.

Returns: The calculated volume of the phytomer.

Definition at line 2110 of file PlantArchitecture.cpp.

◆ deletePhytomer()

void Phytomer::deletePhytomer ( )

Deletes the phytomer and its associated components.

This method handles the cleanup and deletion of all parts associated with the phytomer, including internode, leaves, inflorescence structures, and any child or subsequent phytomers within the shoot.

Definition at line 2956 of file PlantArchitecture.cpp.

◆ getAxisVector()

helios::vec3 Phytomer::getAxisVector	(	float	stem_fraction,
		const std::vector< helios::vec3 > &	axis_vertices
	)

static

Computes the normalized vector direction along the axis at a given fraction of the stem.

Parameters

[in]	stem_fraction	Fraction along the stem (value between 0.0 and 1.0) for which the axis vector is computed.
[in]	axis_vertices	A list of 3D points defining the vertices of the axis.

Returns: A normalized vector direction at the given fraction along the axis.

Definition at line 389 of file PlantArchitecture.cpp.

◆ getInternodeAxisVector()

helios::vec3 Phytomer::getInternodeAxisVector ( float stem_fraction ) const

Retrieves the axis vector of the internode at a given fraction along the internode.

Parameters

[in] stem_fraction Fraction along the stem (value between 0.0 and 1.0) for which the axis vector is computed.

Returns: A vec3 representing the axis vector of the internode at the specified internode fraction.

Definition at line 368 of file PlantArchitecture.cpp.

◆ getInternodeLength()

float Phytomer::getInternodeLength ( ) const

Computes the total length of the internode.

Returns: The cumulative length of the internode based on its node positions.

Definition at line 415 of file PlantArchitecture.cpp.

◆ getInternodeNodePositions()

std::vector< helios::vec3 > Phytomer::getInternodeNodePositions ( ) const

Retrieve the positions of nodes associated with an internode.

Returns: A vector of vec3 objects representing the node positions for the current internode.

Definition at line 348 of file PlantArchitecture.cpp.

◆ getInternodeNodeRadii()

std::vector< float > Phytomer::getInternodeNodeRadii ( ) const

Retrieve the radii of nodes associated with an internode.

Returns: A vector of floats representing the radii of the nodes for the current internode.

Definition at line 358 of file PlantArchitecture.cpp.

◆ getInternodeRadius() [1/2]

float Phytomer::getInternodeRadius ( ) const

Retrieves the radius of the internode.

Returns: The radius of the internode.

Definition at line 411 of file PlantArchitecture.cpp.

◆ getInternodeRadius() [2/2]

float Phytomer::getInternodeRadius ( float stem_fraction ) const

Retrieves the radius of the internode based on the stem fraction.

Parameters

[in] stem_fraction Fraction along the stem (value between 0.0 and 1.0) for which the radius is computed.

Returns: The radius of the internode at the specified stem fraction.

Definition at line 429 of file PlantArchitecture.cpp.

◆ getLeafArea()

float Phytomer::getLeafArea ( ) const

Calculates the total leaf area for the current phytomer.

Returns: Total leaf area as a float value.

Definition at line 433 of file PlantArchitecture.cpp.

◆ getLeafBasePosition()

helios::vec3 Phytomer::getLeafBasePosition	(	uint	petiole_index,
		uint	leaf_index
	)		const

Retrieves the position of the base of a leaf within the phytomer.

Parameters

[in]	petiole_index	Index of the petiole within the phytomer structure.
[in]	leaf_index	Index of the leaf within the specified petiole.

Returns: A vec3 indicating the position of the leaf base.

Definition at line 450 of file PlantArchitecture.cpp.

◆ getPeduncleAxisVector()

helios::vec3 Phytomer::getPeduncleAxisVector	(	float	stem_fraction,
		uint	petiole_index,
		uint	bud_index
	)		const

Retrieves the peduncle axis vector for a given stem fraction, petiole index, and floral bud index.

Parameters

[in]	stem_fraction	Fraction along the peduncle (value between 0.0 and 1.0) for which the axis vector is computed.
[in]	petiole_index	Index of the petiole containing the floral bud.
[in]	bud_index	Index of the floral bud within the petiole.

Returns: The axis vector of the specified peduncle as a helios::vec3.

Definition at line 379 of file PlantArchitecture.cpp.

◆ getPetioleAxisVector()

helios::vec3 Phytomer::getPetioleAxisVector	(	float	stem_fraction,
		uint	petiole_index
	)		const

Retrieves the petiole axis vector for a given stem fraction and petiole index.

Parameters

[in]	stem_fraction	Fraction along the stem (value between 0.0 and 1.0) for which the axis vector is computed.
[in]	petiole_index	Index of the petiole for which the axis vector is retrieved.

Returns: The axis vector of the specified petiole as a helios::vec3.

Definition at line 372 of file PlantArchitecture.cpp.

◆ getPetioleLength()

float Phytomer::getPetioleLength ( ) const

Retrieves the length of the petiole.

Returns: Length of the petiole.

Definition at line 424 of file PlantArchitecture.cpp.

◆ hasLeaf()

bool Phytomer::hasLeaf ( ) const

Checks if the phytomer has a leaf.

Returns: True if the phytomer has at least one leaf, false otherwise.

Definition at line 3022 of file PlantArchitecture.cpp.

◆ removeLeaf()

void Phytomer::removeLeaf ( )

Removes the leaf and its associated properties from the phytomer.

This function resets the phytomer's leaf-related attributes, such as petiole radii, vertices, colors, length, and other geometric properties. It also removes associated objects from the context.

Definition at line 2935 of file PlantArchitecture.cpp.

◆ rotateLeaf()

void Phytomer::rotateLeaf	(	uint	petiole_index,
		uint	leaf_index,
		const AxisRotation &	rotation
	)

Rotates a specified leaf around its base using the given rotation parameters.

This function adjusts the leaf's orientation based on the specified petiole and leaf indices and applies the provided axis rotation values.

Parameters

[in]	petiole_index	Index identifying the petiole to which the leaf belongs
[in]	leaf_index	Index of the specific leaf within the petiole
[in]	rotation	AxisRotation object containing pitch, roll, and yaw values for the rotation

Definition at line 2557 of file PlantArchitecture.cpp.

◆ scaleInternodeMaxLength()

void Phytomer::scaleInternodeMaxLength ( float scale_factor )

Scale the fully-elongated (maximum) internode length as a fraction of its current fully-elongated length.

Parameters

[in] scale_factor Fraction by which to scale the fully-elongated internode length

Definition at line 2654 of file PlantArchitecture.cpp.

◆ scaleLeafPrototypeScale() [1/2]

void Phytomer::scaleLeafPrototypeScale ( float scale_factor )

Scales the leaf prototype by the given scale factor for all petioles in the phytomer. Value is uniformly applied for all leaves/leaflets in the petiole.

Parameters

[in] scale_factor Factor by which to scale the leaf prototype. Values less than 0 are clamped to 0.

Definition at line 2817 of file PlantArchitecture.cpp.

◆ scaleLeafPrototypeScale() [2/2]

void Phytomer::scaleLeafPrototypeScale	(	uint	petiole_index,
		float	scale_factor
	)

Scales the leaf prototype by the given scale factor. Value is uniformly applied for all leaves/leaflets in the petiole.

This function scales the leaf prototype geometry by the specified factor.

Parameters

	petiole_index	Index of the petiole to which the leaf belongs
[in]	scale_factor	Factor by which to scale the leaf prototype. Values less than 0 are clamped to 0.

Definition at line 2793 of file PlantArchitecture.cpp.

◆ scalePetioleGeometry()

void Phytomer::scalePetioleGeometry	(	uint	petiole_index,
		float	target_length,
		float	target_base_radius
	)

Scale petiole geometry to match target length and radius.

This function rescales an existing petiole's 3D geometry (vertices and radii) to match the specified target dimensions. Used during XML deserialization to restore actual petiole sizes that may differ from parameter-based values.

Parameters

petiole_index	Index of the petiole to scale
target_length	Target total length of the petiole in meters
target_base_radius	Target radius at the petiole base in meters

Definition at line 2823 of file PlantArchitecture.cpp.

◆ setFloralBudState() [1/3]

void Phytomer::setFloralBudState ( BudState state )

Sets the floral bud state for all non-terminal buds.

Parameters

[in] state New BudState to apply to all non-terminal buds.

Definition at line 483 of file PlantArchitecture.cpp.

◆ setFloralBudState() [2/3]

void Phytomer::setFloralBudState	(	BudState	state,
		FloralBud &	fbud
	)

Sets the state of a floral bud.

Parameters

[in]	state	New state to set for the floral bud.
[in,out]	fbud	Reference to the FloralBud object whose state is to be updated.

Definition at line 503 of file PlantArchitecture.cpp.

◆ setFloralBudState() [3/3]

void Phytomer::setFloralBudState	(	BudState	state,
		uint	petiole_index,
		uint	bud_index
	)

Sets the state of a specific floral bud.

Parameters

[in]	state	The new state to set for the floral bud.
[in]	petiole_index	The index of the petiole containing the target bud.
[in]	bud_index	The index of the bud within the specified petiole.

Definition at line 493 of file PlantArchitecture.cpp.

◆ setInflorescenceScaleFraction()

void Phytomer::setInflorescenceScaleFraction	(	FloralBud &	fbud,
		float	inflorescence_scale_factor_fraction
	)		const

Sets the scaling fraction for the inflorescence of a floral bud.

Parameters

[in]	fbud	Reference to the floral bud object whose inflorescence scaling will be updated.
[in]	inflorescence_scale_factor_fraction	Fractional value (between 0 and 1) representing the new scale factor for the inflorescence.

Definition at line 2918 of file PlantArchitecture.cpp.

◆ setInternodeLengthScaleFraction()

void Phytomer::setInternodeLengthScaleFraction	(	float	internode_scale_factor_fraction,
		bool	update_context_geometry
	)

Set the current internode length as a fraction of its maximum length.

Parameters

[in]	internode_scale_factor_fraction	Fraction of the maximum internode length
[in]	update_context_geometry	If true, the context geometry will be immediately updated to reflect the new internode length. If false, the geometry will be updated the next time Context geometry information is needed.

Definition at line 2613 of file PlantArchitecture.cpp.

◆ setInternodeMaxLength()

void Phytomer::setInternodeMaxLength ( float internode_length_max_new )

Set the fully-elongated (maximum) internode length.

Parameters

[in] internode_length_max_new Fully-elongated length of the internode

Definition at line 2665 of file PlantArchitecture.cpp.

◆ setInternodeMaxRadius()

void Phytomer::setInternodeMaxRadius ( float internode_radius_max_new )

Set the maximum radius of the internode.

Parameters

[in] internode_radius_max_new Maximum radius of the internode

Definition at line 2670 of file PlantArchitecture.cpp.

◆ setLeafPrototypeScale() [1/2]

void Phytomer::setLeafPrototypeScale ( float leaf_prototype_scale )

Set the fully-elongated (maximum) leaf prototype scale for all petioles in the phytomer. Value is uniformly applied for all leaves/leaflets in the petiole.

Parameters

[in] leaf_prototype_scale Leaf scale factor for fully-elongated leaf

Definition at line 2787 of file PlantArchitecture.cpp.

◆ setLeafPrototypeScale() [2/2]

void Phytomer::setLeafPrototypeScale	(	uint	petiole_index,
		float	leaf_prototype_scale
	)

Set the fully-elongated (maximum) leaf prototype scale. Value is uniformly applied for all leaves/leaflets in the petiole.

Parameters

	petiole_index	Index of the petiole to which the leaf belongs
[in]	leaf_prototype_scale	Leaf scale factor for fully-elongated leaf

Definition at line 2761 of file PlantArchitecture.cpp.

◆ setLeafScaleFraction() [1/2]

void Phytomer::setLeafScaleFraction ( float leaf_scale_factor_fraction )

Set the leaf scale as a fraction of its total fully-elongated scale factor for all petioles in the phytomer. Value is uniformly applied for all leaves/leaflets in the phytomer.

Parameters

[in] leaf_scale_factor_fraction Fraction of the total fully-elongated leaf scale factor (i.e., =1 for fully-elongated leaf)

Definition at line 2755 of file PlantArchitecture.cpp.

◆ setLeafScaleFraction() [2/2]

void Phytomer::setLeafScaleFraction	(	uint	petiole_index,
		float	leaf_scale_factor_fraction
	)

Set the leaf scale as a fraction of its total fully-elongated scale factor. Value is uniformly applied for all leaves/leaflets in the petiole.

Parameters

	petiole_index	Index of the petiole to which the leaf belongs
[in]	leaf_scale_factor_fraction	Fraction of the total fully-elongated leaf scale factor (i.e., =1 for fully-elongated leaf)

Definition at line 2675 of file PlantArchitecture.cpp.

◆ setPetioleBase()

void Phytomer::setPetioleBase ( const helios::vec3 & base_position )

Sets the base position of the petiole to the specified position.

Updates the position of the petiole, leaf bases, and floral buds, ensuring all associated geometry and objects are translated accordingly.

Parameters

[in] base_position New base position for the petiole

Definition at line 2509 of file PlantArchitecture.cpp.

◆ setVegetativeBudState() [1/3]

void Phytomer::setVegetativeBudState ( BudState state )

Sets the vegetative bud state for all axillary vegetative buds in the phytomer.

Parameters

[in] state The new state to apply to the vegetative buds.

Definition at line 461 of file PlantArchitecture.cpp.

◆ setVegetativeBudState() [2/3]

void Phytomer::setVegetativeBudState	(	BudState	state,
		uint	petiole_index,
		uint	bud_index
	)

Sets the state of a vegetative bud at the specified petiole and bud indices.

Parameters

[in]	state	The desired vegetative bud state.
[in]	petiole_index	Index of the petiole where the bud is located.
[in]	bud_index	Index of the bud within the specified petiole.

Definition at line 469 of file PlantArchitecture.cpp.

◆ setVegetativeBudState() [3/3]

void Phytomer::setVegetativeBudState	(	BudState	state,
		VegetativeBud &	vbud
	)

static

Sets the vegetative bud's state to the specified state.

Parameters

[in]	state	The desired state to set for the vegetative bud.
[in,out]	vbud	Reference to the vegetative bud whose state will be modified.

Definition at line 479 of file PlantArchitecture.cpp.

Friends And Related Symbol Documentation

◆ PlantArchitecture

friend class PlantArchitecture

friend

Definition at line 1500 of file PlantArchitecture.h.

◆ Shoot

friend struct Shoot

friend

Definition at line 1499 of file PlantArchitecture.h.

Field Documentation

◆ age

float Phytomer::age = 0

Time since the phytomer was created.

Definition at line 1426 of file PlantArchitecture.h.

◆ axillary_vegetative_buds

std::vector<std::vector<VegetativeBud> > Phytomer::axillary_vegetative_buds

Definition at line 1436 of file PlantArchitecture.h.

◆ build_context_geometry_peduncle

bool Phytomer::build_context_geometry_peduncle = true

Definition at line 1447 of file PlantArchitecture.h.

◆ build_context_geometry_petiole

bool Phytomer::build_context_geometry_petiole = true

Definition at line 1446 of file PlantArchitecture.h.

◆ current_internode_scale_factor

float Phytomer::current_internode_scale_factor = 1

Definition at line 1429 of file PlantArchitecture.h.

◆ current_leaf_scale_factor

std::vector<float> Phytomer::current_leaf_scale_factor

Definition at line 1430 of file PlantArchitecture.h.

◆ downstream_leaf_area

float Phytomer::downstream_leaf_area = 0

Definition at line 1434 of file PlantArchitecture.h.

◆ floral_buds

std::vector<std::vector<FloralBud> > Phytomer::floral_buds

Definition at line 1437 of file PlantArchitecture.h.

◆ internode_colors

std::vector<helios::RGBcolor> Phytomer::internode_colors

Definition at line 1409 of file PlantArchitecture.h.

◆ internode_curvature_perturbations

std::vector<float> Phytomer::internode_curvature_perturbations

Stochastic curvature perturbation values for each internode segment (for exact XML reconstruction)

Definition at line 1443 of file PlantArchitecture.h.

◆ internode_length_max

float Phytomer::internode_length_max

Definition at line 1441 of file PlantArchitecture.h.

◆ internode_phyllotactic_angle

float Phytomer::internode_phyllotactic_angle

Definition at line 1397 of file PlantArchitecture.h.

◆ internode_pitch

float Phytomer::internode_pitch

Definition at line 1397 of file PlantArchitecture.h.

◆ internode_radius_initial

float Phytomer::internode_radius_initial

Definition at line 1439 of file PlantArchitecture.h.

◆ internode_radius_max

float Phytomer::internode_radius_max

Definition at line 1440 of file PlantArchitecture.h.

◆ internode_yaw_perturbations

std::vector<float> Phytomer::internode_yaw_perturbations

Stochastic yaw perturbation values for each internode segment (for exact XML reconstruction)

Definition at line 1444 of file PlantArchitecture.h.

◆ isdormant

bool Phytomer::isdormant = false

Definition at line 1427 of file PlantArchitecture.h.

◆ leaf_bases

std::vector<std::vector<helios::vec3> > Phytomer::leaf_bases

Definition at line 1390 of file PlantArchitecture.h.

◆ leaf_objIDs

std::vector<std::vector<uint> > Phytomer::leaf_objIDs

Definition at line 1413 of file PlantArchitecture.h.

◆ leaf_rotation

std::vector<std::vector<AxisRotation> > Phytomer::leaf_rotation

Definition at line 1407 of file PlantArchitecture.h.

◆ leaf_size_max

std::vector<std::vector<float> > Phytomer::leaf_size_max

Definition at line 1406 of file PlantArchitecture.h.

◆ old_phytomer_volume

float Phytomer::old_phytomer_volume = 0

Definition at line 1432 of file PlantArchitecture.h.

◆ parent_shoot_ID

uint Phytomer::parent_shoot_ID

Definition at line 1422 of file PlantArchitecture.h.

◆ parent_shoot_ptr

Shoot* Phytomer::parent_shoot_ptr

Definition at line 1423 of file PlantArchitecture.h.

◆ peduncle_curvature

std::vector<std::vector<float> > Phytomer::peduncle_curvature

Definition at line 1396 of file PlantArchitecture.h.

◆ peduncle_length

std::vector<std::vector<float> > Phytomer::peduncle_length

Definition at line 1393 of file PlantArchitecture.h.

◆ peduncle_pitch

std::vector<std::vector<float> > Phytomer::peduncle_pitch

Definition at line 1395 of file PlantArchitecture.h.

◆ peduncle_radii

std::vector<std::vector<std::vector<float> > > Phytomer::peduncle_radii

Definition at line 1392 of file PlantArchitecture.h.

◆ peduncle_radius

std::vector<std::vector<float> > Phytomer::peduncle_radius

Definition at line 1394 of file PlantArchitecture.h.

◆ peduncle_vertices

std::vector<std::vector<std::vector<helios::vec3> > > Phytomer::peduncle_vertices

Definition at line 1391 of file PlantArchitecture.h.

◆ petiole_axis_initial

std::vector<helios::vec3> Phytomer::petiole_axis_initial

Definition at line 1404 of file PlantArchitecture.h.

◆ petiole_colors

std::vector<helios::RGBcolor> Phytomer::petiole_colors

Definition at line 1410 of file PlantArchitecture.h.

◆ petiole_curvature

std::vector<float> Phytomer::petiole_curvature

Definition at line 1402 of file PlantArchitecture.h.

◆ petiole_length

std::vector<float> Phytomer::petiole_length

Definition at line 1400 of file PlantArchitecture.h.

◆ petiole_objIDs

std::vector<std::vector<uint> > Phytomer::petiole_objIDs

Definition at line 1412 of file PlantArchitecture.h.

◆ petiole_pitch

std::vector<float> Phytomer::petiole_pitch

Definition at line 1401 of file PlantArchitecture.h.

◆ petiole_radii

std::vector<std::vector<float> > Phytomer::petiole_radii

Definition at line 1399 of file PlantArchitecture.h.

◆ petiole_rotation_axis

std::vector<helios::vec3> Phytomer::petiole_rotation_axis

Definition at line 1405 of file PlantArchitecture.h.

◆ petiole_taper

std::vector<float> Phytomer::petiole_taper

Definition at line 1403 of file PlantArchitecture.h.

◆ petiole_vertices

std::vector<std::vector<helios::vec3> > Phytomer::petiole_vertices

Coordinates of internode tube segments. Index is tube segment within internode.

Definition at line 1389 of file PlantArchitecture.h.

◆ phytomer_parameters

PhytomerParameters Phytomer::phytomer_parameters

Definition at line 1415 of file PlantArchitecture.h.

◆ plantID

uint Phytomer::plantID

Definition at line 1421 of file PlantArchitecture.h.

◆ rank

uint Phytomer::rank

Definition at line 1417 of file PlantArchitecture.h.

◆ shoot_index

helios::int3 Phytomer::shoot_index

.x = index of phytomer along shoot, .y = current number of phytomers on parent shoot, .z = maximum number of phytomers on parent shoot

Definition at line 1419 of file PlantArchitecture.h.

The documentation for this struct was generated from the following files:

plugins/plantarchitecture/include/PlantArchitecture.h
plugins/plantarchitecture/src/CarbohydrateModel.cpp
plugins/plantarchitecture/src/PlantArchitecture.cpp

	1.3.64

Public Member Functions

Static Public Member Functions

Data Fields

Friends

Detailed Description

Constructor & Destructor Documentation

◆ Phytomer()

Member Function Documentation

◆ calculateDownstreamLeafArea()

◆ calculatePhytomerVolume()

◆ deletePhytomer()

◆ getAxisVector()

◆ getInternodeAxisVector()

◆ getInternodeLength()

◆ getInternodeNodePositions()

◆ getInternodeNodeRadii()

◆ getInternodeRadius() [1/2]

◆ getInternodeRadius() [2/2]

◆ getLeafArea()

◆ getLeafBasePosition()

◆ getPeduncleAxisVector()

◆ getPetioleAxisVector()

◆ getPetioleLength()

◆ hasLeaf()

◆ removeLeaf()

◆ rotateLeaf()

◆ scaleInternodeMaxLength()

◆ scaleLeafPrototypeScale() [1/2]

◆ scaleLeafPrototypeScale() [2/2]

◆ scalePetioleGeometry()

◆ setFloralBudState() [1/3]

◆ setFloralBudState() [2/3]

◆ setFloralBudState() [3/3]

◆ setInflorescenceScaleFraction()

◆ setInternodeLengthScaleFraction()

◆ setInternodeMaxLength()

◆ setInternodeMaxRadius()

◆ setLeafPrototypeScale() [1/2]

◆ setLeafPrototypeScale() [2/2]

◆ setLeafScaleFraction() [1/2]

◆ setLeafScaleFraction() [2/2]

◆ setPetioleBase()

◆ setVegetativeBudState() [1/3]

◆ setVegetativeBudState() [2/3]

◆ setVegetativeBudState() [3/3]

Friends And Related Symbol Documentation

◆ PlantArchitecture

◆ Shoot

Field Documentation

◆ age

◆ axillary_vegetative_buds

◆ build_context_geometry_peduncle

◆ build_context_geometry_petiole

◆ current_internode_scale_factor

◆ current_leaf_scale_factor

◆ downstream_leaf_area

◆ floral_buds

◆ internode_colors

◆ internode_curvature_perturbations

◆ internode_length_max

◆ internode_phyllotactic_angle

◆ internode_pitch

◆ internode_radius_initial

◆ internode_radius_max

◆ internode_yaw_perturbations

◆ isdormant

◆ leaf_bases

◆ leaf_objIDs

◆ leaf_rotation

◆ leaf_size_max

◆ old_phytomer_volume

◆ parent_shoot_ID

◆ parent_shoot_ptr

◆ peduncle_curvature

◆ peduncle_length

◆ peduncle_pitch

◆ peduncle_radii

◆ peduncle_radius

◆ peduncle_vertices

◆ petiole_axis_initial