High-level interface for plant hydraulics modeling. More...

Detailed Description

High-level interface for plant hydraulics modeling.

The model computes the water potential of the root, stem and leaf compartments of a plant from the transpiration of its leaves and a soil water potential set by the user. Stems and roots are each one compartment per plant; leaf water potential, turgor pressure, osmotic potential and relative water content are computed for each leaf primitive.

Leaves are grouped into plants by a "plantID", read from the object data of a primitive's parent object or from the primitive's own data. run() groups the primitives it is given that have no plantID into a new plant (see run()).

Input primitive data (float):

"latent_flux" (W/m²): transpiration, e.g. from EnergyBalanceModel. A leaf without it transpires nothing, and the plant's transpiration is the area-weighted mean over the primitives that do have it (zero if none do).
"temperature" (K, default 300): surface temperature, used for a temperature-dependent leaf conductance
"air_temperature" (K, default 298.15): stem temperature; the root is taken to be 5 K cooler. Used for a temperature-dependent stem or root conductance, and read from one primitive only, the one with the lowest UUID in the plant.
"water_potential" (MPa, default -0.001): leaf water potential at which a water-potential dependent leaf conductance is evaluated. It is also an output, so repeated runs start from the previous result.
"relative_water_content" (default 1.0): initial leaf relative water content, read by non-steady-state runs only

Water-potential dependent conductances are evaluated once per run at the water potentials from before the run (for the stem and root, those stored from the model's previous run of the plant, or -0.001 MPa), so a steady-state run is not iterated to a self-consistent solution.

Output primitive data:

"water_potential" (MPa), "turgor_pressure" (MPa), "osmotic_potential" (MPa), "relative_water_content" (unitless)

Steady-state runs (timespan=0) are the supported mode; non-steady-state runs are under construction in the native plugin.

System requirements:

Cross-platform support (Windows, Linux, macOS)
No GPU required
No special dependencies
Plant hydraulics plugin compiled into PyHelios

Example: >>> with Context() as context: ... # with: from pyhelios import Context; from pyhelios.types import vec2, vec3 ... leaf = context.addPatch(center=vec3(0, 0, 1), size=vec2(0.1, 0.1)) ... context.setPrimitiveDataFloat(leaf, "latent_flux", 100.0) ... ... with PlantHydraulicsModel(context) as hydraulics: ... coeffs = PlantHydraulicsModelCoefficients() ... coeffs.setLeafHydraulicCapacitanceFromLibrary("pistachio") ... hydraulics.setModelCoefficients(coeffs) ... ... hydraulics.run([leaf]) ... psi_stem = hydraulics.getStemWaterPotential(leaf)

Definition at line 576 of file PlantHydraulics.py.

Public Member Functions
	__init__ (self, Context context)
	Initialize PlantHydraulicsModel with graceful plugin handling.

	__enter__ (self)
	Context manager entry.

	__exit__ (self, exc_type, exc_value, traceback)
	Context manager exit with proper cleanup.

	__del__ (self)
	Destructor to ensure C++ resources freed even without 'with' statement.

	getNativePtr (self)
	Get the native pointer for advanced operations.

None	setModelCoefficients (self, PlantHydraulicsModelCoefficients modelcoefficients, Optional[List[int]] UUIDs=None)
	Set the model coefficients for all primitives, or for a subset of primitives.

None	setModelCoefficientsFromLibrary (self, str species, Optional[Union[int, List[int]]] UUIDs=None)
	Set the model coefficients from the species library.

PlantHydraulicsModelCoefficients	getModelCoefficients (self, int UUID)
	Get the coefficients set for a specific primitive.

PlantHydraulicsModelCoefficients	getModelCoefficientsFromLibrary (self, str species)
	Get the model coefficients of a species from the library.

None	run (self, Optional[List[int]] UUIDs=None, int timespan=0, int timestep=100)
	Run the plant hydraulics model.

None	outputConductancePrimitiveData (self, bool toggle)
	Toggle writing of the optional primitive data "hydraulic_conductance" (mol/m²/s/MPa).

None	outputCapacitancePrimitiveData (self, bool toggle)
	Toggle writing of the optional primitive data "hydraulic_capacitance" (mol/m²/MPa).

int	groupPrimitivesIntoPlantObject (self, List[int] UUIDs)
	Group leaf primitives into a plant that shares stem, root and soil hydraulics.

int	getPlantID (self, Union[int, List[int]] UUIDs)
	Get the plantID of a primitive, or the plantID shared by a list of primitives.

List[int]	getUniquePlantIDs (self, List[int] UUIDs)
	Get the unique plantIDs of a list of primitives.

List[int]	getPrimitivesByPlantID (self, int plantID)
	Get the primitives belonging to a plant.

List[int]	getPrimitivesWithoutPlantID (self, List[int] UUIDs)
	Get the primitives that have no plantID, in either parent object data or primitive data.

float	getStemWaterPotential (self, Union[int, List[int]] UUIDs)
	Get the stem water potential (MPa) of the plant that a leaf primitive, or a list of leaf primitives of one plant, belongs to.

float	getStemWaterPotentialOfPlant (self, int plantID)
	Get the stem water potential (MPa) of a plant.

float	getRootWaterPotential (self, Union[int, List[int]] UUIDs)
	Get the root water potential (MPa) of the plant that a leaf primitive, or a list of leaf primitives of one plant, belongs to.

float	getRootWaterPotentialOfPlant (self, int plantID)
	Get the root water potential (MPa) of a plant.

float	getSoilWaterPotential (self, Union[int, List[int]] UUIDs)
	Get the soil water potential (MPa) of the plant that a leaf primitive, or a list of leaf primitives of one plant, belongs to.

float	getSoilWaterPotentialOfPlant (self, int plantID)
	Get the soil water potential (MPa) of a plant.

None	setSoilWaterPotentialOfPlant (self, int plantID, float soil_water_potential)
	Set the soil water potential of a plant.

bool	is_available (self)
	Check if PlantHydraulicsModel is available in current build.

Static Public Member Functions
float	computeOsmoticPotential (HydraulicCapacitance coeffs, float relative_water_content)
	Compute osmotic potential (MPa) at a relative water content from pressure-volume curve parameters.

float	computeTurgorPressure (HydraulicCapacitance coeffs, float relative_water_content)
	Compute turgor pressure (MPa) at a relative water content from pressure-volume curve parameters.

float	computeWaterPotential (HydraulicCapacitance coeffs, float relative_water_content)
	Compute water potential (MPa) at a relative water content, the sum of turgor pressure and osmotic potential from pressure-volume curve parameters.

float	computeCapacitance (HydraulicCapacitance coeffs, float relative_water_content)
	Compute hydraulic capacitance (mol/m²/MPa) at a relative water content.

float	computeConductance (HydraulicConductance coeffs, float water_potential, float temperature=298.15)
	Compute hydraulic conductance (mol/m²/s/MPa) at a water potential and temperature.

Public Attributes
	context = context

	hydraulics_model = None

Protected Member Functions
	_check_context_alive (self)
	Raise if the owning Context has been destroyed (see Context.check_context_alive).

None	_require_shared_plant (self, List[int] uuid_list)

float	_get_water_potential (self, str compartment, UUIDs, str method_name)

float	_get_water_potential_of_plant (self, str compartment, plantID, str method_name)

Static Protected Member Functions
	_single_or_list (UUIDs, str method_name)

float	_validate_curve_args (coeffs, relative_water_content, str method_name)

Protected Attributes
	_per_primitive_uuids = set()

Constructor & Destructor Documentation

◆ init()

pyhelios.PlantHydraulics.PlantHydraulicsModel.__init__	(		self,
		Context	context )

Initialize PlantHydraulicsModel with graceful plugin handling.

Parameters

context Helios Context instance

Exceptions

TypeError	If context is not a Context instance
PlantHydraulicsModelError	If the plant hydraulics plugin is not available

Definition at line 588 of file PlantHydraulics.py.

◆ del()

pyhelios.PlantHydraulics.PlantHydraulicsModel.__del__ ( self )

Destructor to ensure C++ resources freed even without 'with' statement.

Definition at line 651 of file PlantHydraulics.py.

Member Function Documentation

◆ enter()

pyhelios.PlantHydraulics.PlantHydraulicsModel.__enter__ ( self )

Context manager entry.

Definition at line 636 of file PlantHydraulics.py.

◆ exit()

pyhelios.PlantHydraulics.PlantHydraulicsModel.__exit__	(	self,
		exc_type,
		exc_value,
		traceback )

Context manager exit with proper cleanup.

Definition at line 640 of file PlantHydraulics.py.

◆ _check_context_alive()

pyhelios.PlantHydraulics.PlantHydraulicsModel._check_context_alive ( self )

protected

Raise if the owning Context has been destroyed (see Context.check_context_alive).

Definition at line 632 of file PlantHydraulics.py.

◆ _get_water_potential()

float pyhelios.PlantHydraulics.PlantHydraulicsModel._get_water_potential	(		self,
		str	compartment,
			UUIDs,
		str	method_name )

protected

Definition at line 1041 of file PlantHydraulics.py.

◆ _get_water_potential_of_plant()

float pyhelios.PlantHydraulics.PlantHydraulicsModel._get_water_potential_of_plant	(		self,
		str	compartment,
			plantID,
		str	method_name )

protected

Definition at line 1052 of file PlantHydraulics.py.

◆ _require_shared_plant()

None pyhelios.PlantHydraulics.PlantHydraulicsModel._require_shared_plant	(		self,
		List[int]	uuid_list )

protected

Definition at line 968 of file PlantHydraulics.py.

◆ _single_or_list()

pyhelios.PlantHydraulics.PlantHydraulicsModel._single_or_list	(		UUIDs,
		str	method_name )

staticprotected

Definition at line 1036 of file PlantHydraulics.py.

◆ _validate_curve_args()

float pyhelios.PlantHydraulics.PlantHydraulicsModel._validate_curve_args	(		coeffs,
			relative_water_content,
		str	method_name )

staticprotected

Definition at line 1144 of file PlantHydraulics.py.

◆ computeCapacitance()

float pyhelios.PlantHydraulics.PlantHydraulicsModel.computeCapacitance	(	HydraulicCapacitance	coeffs,
		float	relative_water_content )

static

Compute hydraulic capacitance (mol/m²/MPa) at a relative water content.

   Returns the constant capacitance if coeffs holds one, otherwise the saturated specific water
   content divided by the slope of the pressure-volume curve.

Parameters

coeffs	Hydraulic capacitance parameters
relative_water_content	Relative water content (unitless), in (0.001, 1]

Definition at line 1201 of file PlantHydraulics.py.

◆ computeConductance()

float pyhelios.PlantHydraulics.PlantHydraulicsModel.computeConductance	(	HydraulicConductance	coeffs,
		float	water_potential,
		float	temperature = 298.15 )

static

Compute hydraulic conductance (mol/m²/s/MPa) at a water potential and temperature.

Parameters

coeffs	Hydraulic conductance parameters
water_potential	Water potential (MPa)
temperature	Temperature (K); used only if coeffs has temperature dependence enabled

Definition at line 1216 of file PlantHydraulics.py.

◆ computeOsmoticPotential()

float pyhelios.PlantHydraulics.PlantHydraulicsModel.computeOsmoticPotential	(	HydraulicCapacitance	coeffs,
		float	relative_water_content )

static

Compute osmotic potential (MPa) at a relative water content from pressure-volume curve parameters.

Parameters

coeffs	Pressure-volume curve parameters
relative_water_content	Relative water content (unitless), in (0, 1]

Definition at line 1161 of file PlantHydraulics.py.

◆ computeTurgorPressure()

float pyhelios.PlantHydraulics.PlantHydraulicsModel.computeTurgorPressure	(	HydraulicCapacitance	coeffs,
		float	relative_water_content )

static

Compute turgor pressure (MPa) at a relative water content from pressure-volume curve parameters.

Parameters

coeffs	Pressure-volume curve parameters
relative_water_content	Relative water content (unitless), in (0, 1]

Definition at line 1173 of file PlantHydraulics.py.

◆ computeWaterPotential()

float pyhelios.PlantHydraulics.PlantHydraulicsModel.computeWaterPotential	(	HydraulicCapacitance	coeffs,
		float	relative_water_content )

static

Compute water potential (MPa) at a relative water content, the sum of turgor pressure and osmotic potential from pressure-volume curve parameters.

Parameters

coeffs	Pressure-volume curve parameters
relative_water_content	Relative water content (unitless), in (0, 1]

Definition at line 1186 of file PlantHydraulics.py.

◆ getModelCoefficients()

PlantHydraulicsModelCoefficients pyhelios.PlantHydraulics.PlantHydraulicsModel.getModelCoefficients	(		self,
		int	UUID )

Get the coefficients set for a specific primitive.

   Only coefficients given for specific primitives can be read: those set with
   setModelCoefficients() or setModelCoefficientsFromLibrary() and a UUIDs argument. A primitive
   without its own coefficients uses the model-wide ones, which the native model does not
   expose.

   Leaf capacitance taken from the species library is returned as its pressure-volume curve
   parameters, with leaf_capacitance_species set to None.

Parameters

UUID	Primitive UUID

Returns: A new PlantHydraulicsModelCoefficients holding the primitive's coefficients

Exceptions

ValueError	If UUID is not a non-negative integer
PlantHydraulicsModelError	If no coefficients were set for this primitive, or the operation fails

Example: >>> hydraulics.setModelCoefficients(coeffs, UUIDs=[leaf_uuid]) >>> hydraulics.getModelCoefficients(leaf_uuid).LeafHydraulicConductance.saturated_conductance

Definition at line 777 of file PlantHydraulics.py.

◆ getModelCoefficientsFromLibrary()

PlantHydraulicsModelCoefficients pyhelios.PlantHydraulics.PlantHydraulicsModel.getModelCoefficientsFromLibrary	(		self,
		str	species )

Get the model coefficients of a species from the library.

   The library provides leaf pressure-volume curve parameters; all other coefficients are at
   their default values. The leaf capacitance is returned as its parameter values, with
   leaf_capacitance_species set to None.

Parameters

species Species name. See pyhelios.PlantHydraulics.AVAILABLE_SPECIES.

Returns: A new PlantHydraulicsModelCoefficients

Exceptions

ValueError	If the species is not in the library
PlantHydraulicsModelError	If operation fails

Example: >>> coeffs = hydraulics.getModelCoefficientsFromLibrary("Walnut") >>> coeffs.LeafHydraulicCapacitance.osmotic_potential_at_full_turgor -1.6386...

Definition at line 815 of file PlantHydraulics.py.

◆ getNativePtr()

pyhelios.PlantHydraulics.PlantHydraulicsModel.getNativePtr ( self )

Get the native pointer for advanced operations.

Definition at line 661 of file PlantHydraulics.py.

◆ getPlantID()

int pyhelios.PlantHydraulics.PlantHydraulicsModel.getPlantID	(		self,
		Union[int, List[int]]	UUIDs )

Get the plantID of a primitive, or the plantID shared by a list of primitives.

Parameters

UUIDs Primitive UUID or list of UUIDs

Returns: The plantID

Exceptions

ValueError	If UUIDs is empty
PlantHydraulicsModelError	If a primitive has no plantID, or the primitives do not share one

Definition at line 957 of file PlantHydraulics.py.

◆ getPrimitivesByPlantID()

List[int] pyhelios.PlantHydraulics.PlantHydraulicsModel.getPrimitivesByPlantID	(		self,
		int	plantID )

Get the primitives belonging to a plant.

Parameters

plantID Plant identifier

Returns: List of primitive UUIDs; empty if no primitive has this plantID

Definition at line 1004 of file PlantHydraulics.py.

◆ getPrimitivesWithoutPlantID()

List[int] pyhelios.PlantHydraulics.PlantHydraulicsModel.getPrimitivesWithoutPlantID	(		self,
		List[int]	UUIDs )

Get the primitives that have no plantID, in either parent object data or primitive data.

Parameters

UUIDs Primitive UUIDs to check

Returns: List of primitive UUIDs without a plantID

Exceptions

ValueError If UUIDs is empty

Definition at line 1025 of file PlantHydraulics.py.

◆ getRootWaterPotential()

float pyhelios.PlantHydraulics.PlantHydraulicsModel.getRootWaterPotential	(		self,
		Union[int, List[int]]	UUIDs )

Get the root water potential (MPa) of the plant that a leaf primitive, or a list of leaf primitives of one plant, belongs to.

Exceptions

PlantHydraulicsModelError If the model has not been run for the plant

Definition at line 1086 of file PlantHydraulics.py.

◆ getRootWaterPotentialOfPlant()

float pyhelios.PlantHydraulics.PlantHydraulicsModel.getRootWaterPotentialOfPlant	(		self,
		int	plantID )

Get the root water potential (MPa) of a plant.

Exceptions

PlantHydraulicsModelError If the model has not been run for the plant

Definition at line 1095 of file PlantHydraulics.py.

◆ getSoilWaterPotential()

float pyhelios.PlantHydraulics.PlantHydraulicsModel.getSoilWaterPotential	(		self,
		Union[int, List[int]]	UUIDs )

Get the soil water potential (MPa) of the plant that a leaf primitive, or a list of leaf primitives of one plant, belongs to.

Exceptions

PlantHydraulicsModelError If no soil water potential has been set and the model has not been run for the plant

Definition at line 1106 of file PlantHydraulics.py.

◆ getSoilWaterPotentialOfPlant()

float pyhelios.PlantHydraulics.PlantHydraulicsModel.getSoilWaterPotentialOfPlant	(		self,
		int	plantID )

Get the soil water potential (MPa) of a plant.

Exceptions

PlantHydraulicsModelError If no soil water potential has been set and the model has not been run for the plant

Definition at line 1116 of file PlantHydraulics.py.

◆ getStemWaterPotential()

float pyhelios.PlantHydraulics.PlantHydraulicsModel.getStemWaterPotential	(		self,
		Union[int, List[int]]	UUIDs )

Get the stem water potential (MPa) of the plant that a leaf primitive, or a list of leaf primitives of one plant, belongs to.

Exceptions

PlantHydraulicsModelError If the model has not been run for the plant

Definition at line 1067 of file PlantHydraulics.py.

◆ getStemWaterPotentialOfPlant()

float pyhelios.PlantHydraulics.PlantHydraulicsModel.getStemWaterPotentialOfPlant	(		self,
		int	plantID )

Get the stem water potential (MPa) of a plant.

Exceptions

PlantHydraulicsModelError If the model has not been run for the plant

Definition at line 1076 of file PlantHydraulics.py.

◆ getUniquePlantIDs()

List[int] pyhelios.PlantHydraulics.PlantHydraulicsModel.getUniquePlantIDs	(		self,
		List[int]	UUIDs )

Get the unique plantIDs of a list of primitives.

Parameters

UUIDs Primitive UUIDs

Returns: List of unique plantIDs

Exceptions

ValueError	If UUIDs is empty
PlantHydraulicsModelError	If a primitive has no plantID

Definition at line 987 of file PlantHydraulics.py.

◆ groupPrimitivesIntoPlantObject()

int pyhelios.PlantHydraulics.PlantHydraulicsModel.groupPrimitivesIntoPlantObject	(		self,
		List[int]	UUIDs )

Group leaf primitives into a plant that shares stem, root and soil hydraulics.

   Those of the primitives that do not belong to an object are added to a new polymesh object.
   All of them are given the primitive data "plantID", set to that object's ID; primitives
   that already belong to an object stay in it.

Parameters

UUIDs Leaf primitive UUIDs

Returns: The plantID assigned to the primitives

Exceptions

ValueError	If UUIDs is empty, or any of the primitives already has a plantID
PlantHydraulicsModelError	If all of the primitives already belong to an object, so that no polymesh object can be created

Definition at line 925 of file PlantHydraulics.py.

◆ is_available()

bool pyhelios.PlantHydraulics.PlantHydraulicsModel.is_available ( self )

Check if PlantHydraulicsModel is available in current build.

Returns: True if plugin is available, False otherwise

Definition at line 1232 of file PlantHydraulics.py.

◆ outputCapacitancePrimitiveData()

None pyhelios.PlantHydraulics.PlantHydraulicsModel.outputCapacitancePrimitiveData	(		self,
		bool	toggle )

Toggle writing of the optional primitive data "hydraulic_capacitance" (mol/m²/MPa).

   The data is written by non-steady-state runs only.

Parameters

toggle True to write the data

Definition at line 897 of file PlantHydraulics.py.

◆ outputConductancePrimitiveData()

None pyhelios.PlantHydraulics.PlantHydraulicsModel.outputConductancePrimitiveData	(		self,
		bool	toggle )

Toggle writing of the optional primitive data "hydraulic_conductance" (mol/m²/s/MPa).

   The data is written by non-steady-state runs only.

Parameters

toggle True to write the data

Definition at line 881 of file PlantHydraulics.py.

◆ run()

None pyhelios.PlantHydraulics.PlantHydraulicsModel.run	(		self,
		Optional[List[int]]	UUIDs = None,
		int	timespan = 0,
		int	timestep = 100 )

Run the plant hydraulics model.

   Primitives sharing a plantID are treated as the leaves of one plant, with one stem, root and
   soil water potential. The model runs for every plant that the given primitives belong to,
   and writes output data to all primitives in the Context with that plantID, not only to the
   primitives given.

   Given primitives with no plantID are grouped into one new plant: those that do not belong
   to an object are added to a new polymesh object, and all of them are given the primitive
   data "plantID", set to that object's ID. Primitives that already belong to an object stay
   in it.

Parameters

UUIDs	Optional list of primitive UUIDs selecting the plants to run. If None, runs for all primitives in the Context; primitives with no plantID, including any that are not leaves, are then grouped into a single plant.
timespan	Duration of the simulation (s). 0 gives the steady-state solution.
timestep	Timestep of a non-steady-state simulation (s).

Exceptions

ValueError	If UUIDs is empty, timespan is negative, or timestep is not positive
PlantHydraulicsModelError	If calculation fails, including when every primitive without a plantID already belongs to an object, so that no polymesh object can be created

Note: Non-steady-state runs (timespan > 0) are under construction in the native plugin, and require constant stem and root capacitances.

Example: >>> hydraulics.run(leaf_uuids) # steady state, the plants these leaves belong to

Definition at line 859 of file PlantHydraulics.py.

◆ setModelCoefficients()

None pyhelios.PlantHydraulics.PlantHydraulicsModel.setModelCoefficients	(		self,
		PlantHydraulicsModelCoefficients	modelcoefficients,
		Optional[List[int]]	UUIDs = None )

Set the model coefficients for all primitives, or for a subset of primitives.

   Setting coefficients for all primitives clears any coefficients previously set for
   specific primitives.

   Coefficients set for specific primitives apply to their leaf conductance and capacitance
   only. Stem and root water potentials are always computed from the coefficients set for
   all primitives.

Parameters

modelcoefficients	Hydraulic conductance and capacitance parameters
UUIDs	Optional list of primitive UUIDs. If None, applies to all primitives.

Exceptions

ValueError	If modelcoefficients is not a PlantHydraulicsModelCoefficients, a parameter is out of range, or UUIDs is empty
PlantHydraulicsModelError	If operation fails

Example: >>> coeffs = PlantHydraulicsModelCoefficients() >>> coeffs.setLeafHydraulicConductance(0.05, -1.5, 2.0) >>> hydraulics.setModelCoefficients(coeffs)

Definition at line 690 of file PlantHydraulics.py.

◆ setModelCoefficientsFromLibrary()

None pyhelios.PlantHydraulics.PlantHydraulicsModel.setModelCoefficientsFromLibrary	(		self,
		str	species,
		Optional[Union[int, List[int]]]	UUIDs = None )

Set the model coefficients from the species library.

   The library provides leaf pressure-volume curve parameters; all other coefficients take
   their default values.

Parameters

species	Species name. See pyhelios.PlantHydraulics.AVAILABLE_SPECIES.
UUIDs	Optional primitive UUID or list of UUIDs. If None, applies to all primitives.

Exceptions

ValueError	If the species is not in the library or UUIDs is empty
PlantHydraulicsModelError	If operation fails

Example: >>> hydraulics.setModelCoefficientsFromLibrary("Walnut")

Definition at line 731 of file PlantHydraulics.py.

◆ setSoilWaterPotentialOfPlant()

None pyhelios.PlantHydraulics.PlantHydraulicsModel.setSoilWaterPotentialOfPlant	(		self,
		int	plantID,
		float	soil_water_potential )

Set the soil water potential of a plant.

   Plants with no soil water potential set use -0.001 MPa.

Parameters

plantID	Plant identifier
soil_water_potential	Soil water potential (MPa)

Example: >>> plantID = hydraulics.getPlantID(leaf_uuids) >>> hydraulics.setSoilWaterPotentialOfPlant(plantID, -0.05)

Definition at line 1132 of file PlantHydraulics.py.

Member Data Documentation

◆ _per_primitive_uuids

pyhelios.PlantHydraulics.PlantHydraulicsModel._per_primitive_uuids = set()

protected

Definition at line 598 of file PlantHydraulics.py.

◆ context

pyhelios.PlantHydraulics.PlantHydraulicsModel.context = context

Definition at line 595 of file PlantHydraulics.py.

◆ hydraulics_model

pyhelios.PlantHydraulics.PlantHydraulicsModel.hydraulics_model = None

Definition at line 596 of file PlantHydraulics.py.

The documentation for this class was generated from the following file:

pyhelios/PlantHydraulics.py

Detailed Description

Public Member Functions

Static Public Member Functions

Public Attributes

Protected Member Functions

Static Protected Member Functions

Protected Attributes

Constructor & Destructor Documentation

◆ __init__()

◆ __del__()

Member Function Documentation

◆ __enter__()

◆ __exit__()

◆ _check_context_alive()

◆ _get_water_potential()

◆ _get_water_potential_of_plant()

◆ _require_shared_plant()

◆ _single_or_list()

◆ _validate_curve_args()

◆ computeCapacitance()

◆ computeConductance()

◆ computeOsmoticPotential()

◆ computeTurgorPressure()

◆ computeWaterPotential()

◆ getModelCoefficients()

◆ getModelCoefficientsFromLibrary()

◆ getNativePtr()

◆ getPlantID()

◆ getPrimitivesByPlantID()

◆ getPrimitivesWithoutPlantID()

◆ getRootWaterPotential()

◆ getRootWaterPotentialOfPlant()

◆ getSoilWaterPotential()

◆ getSoilWaterPotentialOfPlant()

◆ getStemWaterPotential()

◆ getStemWaterPotentialOfPlant()

◆ getUniquePlantIDs()

◆ groupPrimitivesIntoPlantObject()

◆ is_available()

◆ outputCapacitancePrimitiveData()

◆ outputConductancePrimitiveData()

◆ run()

◆ setModelCoefficients()

◆ setModelCoefficientsFromLibrary()

◆ setSoilWaterPotentialOfPlant()

Member Data Documentation

◆ _per_primitive_uuids

◆ context

◆ hydraulics_model

◆ init()

◆ del()

◆ enter()

◆ exit()